gersteinlab.org
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http://www.gersteinlab.org/
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http://www.gersteinlab.org/
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Gerstein
Mark Gerstein
266 W●●●●●y Ave
New●●●ven , CT, 06520
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Gerstein
Mark Gerstein
266 W●●●●●y Ave
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Gerstein Lab | gersteinlab.org Reviews
https://gersteinlab.org
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Development of Arabidopsis thaliana Protein Chip
Protein Printing and Probing. 219 Prospect Street KBT 926. New Haven, Connecticut 06511. Michael.snyder at yale.edu. 219 Prospect Street KBT 840. New Haven, Connecticut 06511. Savithramma.dinesh-kumar at yale.edu. 266 Whitney Avenue Bass 432. New Haven, Connecticut 06511. Markgerstein at yale.edu.
Gerstein Lab Publications
8226; By Subject. 8226; Other Writings. Last updated Thu Apr 12 19:43:57 2018). A comprehensive catalog of predicted functional upstream open reading frames in humans. P McGillivray, R Ault, M Pawashe, R Kitchen, S Balasubramanian, M Gerstein (2018). Nucleic Acids Res. FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods. Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap. Molecular and cellular reorganization ...
Gerstein Lab: Networks
Portal for networks research in the Gerstein Lab. The structure and behavior of many biological (and other) systems can be effectively represented as networks. We have several projects related to this topic. Below, we provide links to the various software developed in our group for declaring, visualizing, and analyzing networks. We also provide access to our databases containing network representations of several systems. Finally, links to our network-related publications are provided. A lightweight sema...
Motips - A Motif Analysis Pipeline
To start the analysis for your data, click here. To retrieve the result of a previous submission, click here. For referencing Motips, click here. Motips is a motif analysis pipeline predicting the binding targets of protein domains, such as SH3 domain and kinase phosphorylation domain, based on a Bayesian model. More. Officially released on Oct 1, 2007. OS:Linux 2.6.32-358.el6.x86 64. JVM:Oracle Corporation 1.7.0 09-icedtea. Computational Biology and Bioinformatics.
Yale Bioinformatics -- Courses and Lectures
Biomedical Data Science: Mining and Modeling. Chronological Listing of Lab Lectures.
Interolg/Regulog Database
GersteinInfo
On tools and data. Gallery of Homepage Images. Also, info. on these images. On using material generated by the lab. Other Stuff for the Public. More Info for New People. Info for Lab Members and Collaborators. In general, this wiki hosts general, public information about the Gerstein Lab. Beyond that on the homepage. Lab members should consult the private lab wiki. For lab-specific information (login as user "public"). There's also a wiki for lab meetings. Other Stuff for the Public. Calls, meetings, &c.
Helical Interaction in Membrane Proteins
Helix-Helix Interactions in Proteins:. Tools for interface analysis of interacting helices and a database of membrane proteins. New proteomics page coming soon! HIT: Helix Interaction Tool. Structure-coordinate files in PDB format can be uploaded. Upload format: pdb files and name convention: filename.pdb). Secondary structure assignment is performed and helical interactions are calculated. Interacting helices, residues at the interaction surface and surface properties are displayed.
Coevolution - Main
Coevolution analysis of protein residues. Download to run locally. Required for tree-based seq. weighting only). Absolute hydropathy index change. Case analysis with conservation normalization. Min{H(X Y),H(Y X)}. Max{H(X Y),H(Y X)}. Maximum fraction of gaps per sequence:. Maximum similarity between two sequences (0-1):. Minimum number of sequences after filtering:. Maximum fraction of gaps per site:. Maximum fraction of sequences having the same residue/group:. Elcock and McCammon, PNAS 2001.
Genome Technology group @ Gerstein lab
Genome Technology @ Gerstein lab. Affiliated at Yale University. We are working on the design and analysis of large scale tiling arrays and next generation sequencing data. Our theoretical and computational work is complemented by the collaboration with experimentalists and development of new software tools. For the latest updates of our research, please visit our wiki page.
gersteinlab.org
Gerstein Bioinformatics Group Members
http://www.gersteinlab.org/people
Albert L Williams Professor. Postdoctoral Associates and Fellows. Jt w N Sestan). Jt w G Weinstock). Chemistry; short postdoc. CBB (jt. w. L Pusztai). MCDB (jt. w. F Isaacs). Michael R. Schoenberg. MBB (jt. w. M Simon). Mentored by: ars JZ,DL. Ars JZ mentor: full-time postgrad. Mentored by: ars KKY. Mentored by: ars SK. MD student; KKY mentor. Mentored by: ars RK. MD candidate; ars RK mentor. MD candidate; ars RK JR mentor. Asst Prof. (Adjunct). Stony Brook University, NY.
Mark Gerstein
http://www.gersteinlab.org/about
CBB 752
http://www.gersteinlab.org/courses/452
Class website is here. CBB/CPSC/MBB 752, MBB 452.
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Michael Rutenberg Schoenberg | Simon Lab
http://simonlab.yale.edu/people/michael-rutenberg-schoenberg
Studying Chromatin and lncRNAs at Yale University. Graduate Student (joint with Mark Gerstein Lab. Proudly powered by WordPress. Simon Lab, Last updated Jan 2017.
Mutations in sensitive and ultra-sensitive regions | Gerstein Lab FAQs
https://faq.gersteinlab.org/2014/02/03/mutations-in-sensitive-and-ultra-sensitive-regions
Skip to primary content. Mutations in sensitive and ultra-sensitive regions. February 3, 2014. I read your paper entitled “Integrative annotation of variants from 1092 humans: application to cancer genomics” in Science from Oct. 4, 2013. Since the mutation in the so-called ultra sensitive regions play an important role in cancer development, I wonder whether it is possible to find out where those mutations are in the ultra sensitive region and what mutations they are? Thanks for your interest in our paper.
metagenomics | Gerstein Lab FAQs
https://faq.gersteinlab.org/category/metagenomics
Skip to primary content. Skip to secondary content. Data matrices and R scripts for the paper “Quantifying environmental adaptation of metabolic pathways in metagenomics”. July 10, 2012. With respect to your your metagenomics paper which appeared in PNAS ( http:/ www.pnas.org/content/106/5/1374.long. I was wondering if it is still possible to access the entire (1) environmental features vs. geographic sites and (2) metabolic features vs. geographic sites matricesas used in the paper?
Running FunSeq | Gerstein Lab FAQs
https://faq.gersteinlab.org/2014/05/13/running-funseq
Skip to primary content. May 13, 2014. You should be able to download this software on a mac and use it. You can download it from funseq.gersteinlab.org. Since you are not familiar with downloading software, have you tried to use the online version at http:/ funseq.gersteinlab.org/analysis. You can upload your file and see what you get. This entry was posted in Uncategorized. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:.
diploid-genome | Gerstein Lab FAQs
https://faq.gersteinlab.org/category/diploid-genome
Skip to primary content. Skip to secondary content. Prefix ‘chr’ in liftOver. August 10, 2013. From the documentation @ http:/ info.gersteinlab.org/AlleleSeq:. Using the chain file, one can use the LifeOver tool to convert the annotation coordinates from reference genome to personal haplotypes. However, when I tried to liftOver my bed file using maternal.chain, all returned unMapped. May 31, 2013. I would like to ask about what kind of indels are incorporated into the. Selected for this assembly? Do you ...
ENCODE-Networks Source Code for Context-Specific TF Co-Association Analyses | Gerstein Lab FAQs
https://faq.gersteinlab.org/2014/06/07/encode-networks-source-code-for-context-specific-tf-co-association-analyses
Skip to primary content. ENCODE-Networks Source Code for Context-Specific TF Co-Association Analyses. June 7, 2014. Do you know whether the code for co-association analysis in this paper is available now? If so, it might save us a lot of time. Thanks for your help! The main machine learning method used for the analysis is RuleFit3 which is available here. Http:/ statweb.stanford.edu/ jhf/r-rulefit/rulefit3/R RuleFit3.html. The code is reasonably commented so hopefully it should help. Notify me of new com...
prefix ‘chr’ in liftOver | Gerstein Lab FAQs
https://faq.gersteinlab.org/2013/08/10/prefix-chr-in-liftover
Skip to primary content. Prefix ‘chr’ in liftOver. August 10, 2013. From the documentation @ http:/ info.gersteinlab.org/AlleleSeq:. Using the chain file, one can use the LifeOver tool to convert the annotation coordinates from reference genome to personal haplotypes. However, when I tried to liftOver my bed file using maternal.chain, all returned unMapped. This entry was posted in diploid-genome. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:.
funseq
http://funseq.gersteinlab.org/analysis
Online Tool (testing .). Input file: (this pipeline is for hg19; SNV only). FunSEQ takes BED or VCF files as input. Sample input file. With multiple files, FunSEQ also do recurrent analysis. Minor allele frequency threshold to filter 1KG phaseI SNVs (value 0 1). If MAF=0, all variants in 1KG will be filtered out. For germline or recurrent analysis, we suggest downloading the software. The program needs a few minutes. You can remain on this page and wait for the result, or you can copy your.
www
http://www.markgerstein.net/Home
Edited by Mark Gerstein. Item added by Mark Gerstein. Edited by Mark Gerstein. Attachment from Mark Gerstein.
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Home | Investment Strategies | Gerstein Fisher Funds
International Growth Equity Fund. Global Real Estate Securities Fund. Research & Articles. Living at the intersection. We leverage academic research on how markets incorporate human behavior to build portfolios for our investors. Our data-driven, quantitative approach to investing takes into account the reality of dynamic markets. The Science of Multi-Factor Investing. An introduction to Gerstein Fisher’s own Multi-Factor approach. Watch video. Combining Value and Momentum View article.
Gerstein Fisher Research Center
Call Us: (212) 968-0707. The Gerstein Fisher Research Center. Bridging the Gap Between Theory and Practice. The Gerstein Fisher Research Center is a collaboration between Gerstein Fisher. And a select group of leading academics. In the areas of finance, risk engineering, and economics. Founded in 2009 by Gregg S. Fisher. Selected Research Center Papers. Past Performance Is Indicative of Future Beliefs. By Philip Z. Maymin, Ph.D. and Gregg S. Fisher. Published in Risk and Decision Analysis 2 (2010/2011).
Gerstein Grayson Cohen & Melletz, LLP | Attorneys at Law
Taxes & Planning. Our attorneys are knowledgeable and experienced in every segment of the industry, including office buildings, shopping centers and retail developments, industrial and warehouse facilities, hotels, mixed-use condominiums, and assisted living facilities. The franchise attorneys at the law firm of Gerstein, Grayson, Cohen and Melletz represent both buyers and sellers of franchises, in the acquisition, financing and sale of franchises, as well with respect to the formation of the entity tha...
Law Firm Mount Laurel, NJ-Gerstein Grayson & Cohen LLP 8565289113
Mount Laurel, NJ Law Firm. Gerstein Grayson and Cohen LLP. Gerstein Grayson and Cohen LLP is a law firm located in Mount Laurel, NJ. We have expert attorneys ready to provide representation for you in any court. For all your legal assistance needs, make Gerstein Grayson and Cohen LLP your reliable partner. Learn More About Gerstein Grayson and Cohen LLP:. Divorce and Family Law. Land Use and Zoning. Contact Gerstein Grayson and Cohen LLP today at 856-528-9113 for more information. View our full website.
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Gerstein News | resources and services from the library
Resources and services from the library. Good laboratory practice, from Henry Stewart Talks. April 8, 2012. On good laboratory practice have just been added to the Library’s collection. Part of the Henry Stewart Talks: Biomedical and Life Sciences to which the library subscribes. Presented by academic experts in the field. Edited by Dr. Dian Turnheim, head of the Environment, Health and Safety Division of the Organization for Economic Cooperation and Development in Paris. Continue reading →. April 8, 2012.
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Отличные анекдоты смешные фразы. February 23rd, 2012. В одной школе трое учеников очень нехорошо себя вели, и директор решил вызвать в школу их родителей. Заходят в кабинет родители первого двое мужчин. Директор:. Да вот, мы встретились, полюбили друг друга, поженились, усыновили ребенка и теперь все вместе живем счастливо. А ну убирайтесь отсюда! Разорался директор. Это не семья, а пара извращенцев! Пошли вон, и ребенка своего забирайте! Заходят родители второго две женщины. Директор:. Две секретарши си...
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Divorce Attorneys in Edison, NJ | Gerstein & Richman, LLC.
Mark J. Richman. Aggressive New Jersey lawyers fighting for our clients. Mark J. Richman. Have been together as partners for almost 40 years. They provide quality personal services and they are committed to helping clients navigate through the legal system as easily as possible. Their courtroom experience and negotiating skills allow them to obtain the best possible result. They have established a strong reputation throughout the legal community for their ability and professionalism. 1918 Highway 27,.
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