grch37.rest.ensembl.org

Ensembl GRCh37 Rest API - Ensembl REST API Endpoints

About the Ensembl Project. Ensembl REST API Endpoints. Uses the given identifier to return the archived sequence. Retrieve the archived sequence for a set of identifiers. Retrieves a gene tree for a gene tree stable identifier. Retrieves the gene tree that contains the gene / transcript / translation stable identifier. Retrieves the gene tree that contains the gene identified by a symbol. Retrieves genomic alignments as separate blocks based on a region and species. List the functional classifications of...

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Ensembl GRCh37 Rest API - Ensembl REST API Endpoints | grch37.rest.ensembl.org Reviews

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About the Ensembl Project. Ensembl REST API Endpoints. Uses the given identifier to return the archived sequence. Retrieve the archived sequence for a set of identifiers. Retrieves a gene tree for a gene tree stable identifier. Retrieves the gene tree that contains the gene / transcript / translation stable identifier. Retrieves the gene tree that contains the gene identified by a symbol. Retrieves genomic alignments as separate blocks based on a region and species. List the functional classifications of...

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1 endpoints

2 user guide

3 change log

4 contact ensembl

5 archive

6 resource

7 get archive/id/ id

8 post archive/id

9 comparative genomics

10 get genetree/id/ id

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endpoints,user guide,change log,contact ensembl,archive,resource,get archive/id/ id,post archive/id,comparative genomics,get genetree/id/ id,get genetree/member/id/ id,get alignment/region/ species/ region,get homology/id/ id,cross references,information

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Ensembl GRCh37 Rest API - Ensembl REST API Endpoints | grch37.rest.ensembl.org Reviews

https://grch37.rest.ensembl.org

About the Ensembl Project. Ensembl REST API Endpoints. Uses the given identifier to return the archived sequence. Retrieve the archived sequence for a set of identifiers. Retrieves a gene tree for a gene tree stable identifier. Retrieves the gene tree that contains the gene / transcript / translation stable identifier. Retrieves the gene tree that contains the gene identified by a symbol. Retrieves genomic alignments as separate blocks based on a region and species. List the functional classifications of...

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grch37.rest.ensembl.org

1

Ensembl GRCh37 Rest API - POST archive/id

http://grch37.rest.ensembl.org/documentation/info/archive_id_post

About the Ensembl Project. Retrieve the archived sequence for a set of identifiers. Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. Id" : array }. Id" : ["ENSG00000157764", "ENSG00000248378"] }. Id" : ["ENSG00000157764", "ENSG00000248378"] }. Import requests, sys server = http:/ grch37.rest.ensembl.org ext = /archive/id headers={ Content-Type : application/json, Accept : appl...Import re...

2

Ensembl GRCh37 Rest API - GET info/compara/methods

http://grch37.rest.ensembl.org/documentation/info/compara_methods

About the Ensembl Project. List all compara analyses available (an analysis defines the type of comparative data). Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. The class of the method to query for. Regular expression patterns are supported. Name of the compara database to use. Multiple comparas may exist on a server when accessing Ensembl Genomes data. R = requests.get(server ext,...

3

Ensembl GRCh37 Rest API - GET xrefs/id/:id

http://grch37.rest.ensembl.org/documentation/info/xref_id

About the Ensembl Project. Perform lookups of Ensembl Identifiers and retrieve their external references in other databases. An Ensembl Stable ID. Set to find all genetic features linked to the stable ID, and fetch all external references for them. Specifying this on a gene will also return values from its transcripts and translations. Restrict the search to a database other than the default. Useful if you need to use a DB other than core. Filter by external database. Filter by feature type. Import reque...

4

Ensembl GRCh37 Rest API - GET info/comparas

http://grch37.rest.ensembl.org/documentation/info/comparas

About the Ensembl Project. Lists all available comparative genomics databases and their data release. Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. Use strict; use warnings; use HTTP: Tiny; my $http = HTTP: Tiny- new(); my $server = 'http:/ grch37.rest.ensembl.org'; my $ext = '/info/comparas? Import requests, sys server = http:/ grch37.rest.ensembl.org ext = /info/comparas? Url = URI&#...

5

Ensembl GRCh37 Rest API - GET info/ping

http://grch37.rest.ensembl.org/documentation/info/ping

About the Ensembl Project. Checks if the service is alive. Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. Use strict; use warnings; use HTTP: Tiny; my $http = HTTP: Tiny- new(); my $server = 'http:/ grch37.rest.ensembl.org'; my $ext = '/info/ping? My $response = $http- get($server.$ext, { headers = { 'Content-type' = 'application/json' } }); die Failed! Url = URI.parse(server) http ...

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grch37.ensembl.org

Ensembl Tools

http://grch37.ensembl.org/info/docs/tools/index.html

What is a panel file. VCF to PED Converter. We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account. You will be able to save the results indefinitely. Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. Search our genomes for your DNA or protein sequence. VCF to PED converter. Programmatic access to...

mar2016.archive.ensembl.org

The GRCh37 assembly in Ensembl

http://mar2016.archive.ensembl.org/info/website/tutorials/grch37.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. The GRCh37 assembly in Ensembl. The GRCh37 assembly in Ensembl. The human assembly GRCh37 (also known as hg19) in Ensembl is available as a stable archive, so that you can continue to analyse your human data on its previous sequence. To browse genes, variants and genomic regions all assigned with the previous genomic coordinates, visit our GRCh37 dedicated site. This site and its u...

jul2016.archive.ensembl.org

The GRCh37 assembly in Ensembl

http://jul2016.archive.ensembl.org/info/website/tutorials/grch37.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. The GRCh37 assembly in Ensembl. The GRCh37 assembly in Ensembl. The human assembly GRCh37 (also known as hg19) in Ensembl is available as a stable archive, so that you can continue to analyse your human data on its previous sequence. To browse genes, variants and genomic regions all assigned with the previous genomic coordinates, visit our GRCh37 dedicated site. This site and its u...

ensembl.info

dbSNP 142 and 1000 Genomes Phase 3 – Ensembl Blog

http://www.ensembl.info/blog/2015/04/09/dbsnp-142-and-1000-genomes-phase-3?share=press-this

News about the Ensembl Project and its genome browser. Google Summer of Code ’17. Google Summer of Code ’17. DbSNP 142 and 1000 Genomes Phase 3. April 9, 2015. Due to a somewhat catastrophic hardware failure during our production cycle for Ensembl release 79, we have only been able to release human dbSNP 142. Incorporating 1000 Genomes phase 3 data on our GRCh37-based services ( Web. Grch37.rest.ensembl.org. Anonymous@ensembldb.ensembl.org:3337, VEP. Viewing phase 3 data on the web. Follow us on Twitter.

dec2015.archive.ensembl.org

The GRCh37 assembly in Ensembl

http://dec2015.archive.ensembl.org/info/website/tutorials/grch37.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. The GRCh37 assembly in Ensembl. The GRCh37 assembly in Ensembl. The human assembly GRCh37 (also known as hg19) in Ensembl is available as a stable archive, so that you can continue to analyse your human data on its previous sequence. To browse genes, variants and genomic regions all assigned with the previous genomic coordinates, visit our GRCh37 dedicated site. This site and its u...

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Data Download ▼. High quality curation by expert postdoctoral scientists. Additional tools to explore COSMIC. Further details on using COSMIC's content. How do we annotate genomes? Genomic Landscape of Cancer. Coding mutation consequence (most severe), as predicted by the VEP. The COSMIC Genome Browser. Displays all mutation information across all cancers and has been enhanced in v73 to include ENCODE regulatory features and all available SNPs. For more details, please see the datasheet. Wellcome Trust S...

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grch37.rest.ensembl.org

Ensembl GRCh37 Rest API - Ensembl REST API Endpoints

About the Ensembl Project. Ensembl REST API Endpoints. Uses the given identifier to return the archived sequence. Retrieve the archived sequence for a set of identifiers. Retrieves a gene tree for a gene tree stable identifier. Retrieves the gene tree that contains the gene / transcript / translation stable identifier. Retrieves the gene tree that contains the gene identified by a symbol. Retrieves genomic alignments as separate blocks based on a region and species. List the functional classifications of...

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