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dec2015.archive.ensembl.org

Ensembl genome browser 83

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Ensembl species. Other species are available in Ensembl. Still using Human GRCh37? Ensembl...

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Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Ensembl species. Other species are available in Ensembl. Still using Human GRCh37? Ensembl...
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Ensembl genome browser 83 | dec2015.archive.ensembl.org Reviews

https://dec2015.archive.ensembl.org

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Ensembl species. Other species are available in Ensembl. Still using Human GRCh37? Ensembl...

INTERNAL PAGES

dec2015.archive.ensembl.org dec2015.archive.ensembl.org
1

Ensembl Tools

http://dec2015.archive.ensembl.org/info/docs/tools/index.html

We provide a number of ready-made tools for processing both our data and yours. We routinely delete results from our servers after 10 days, but if you have an ensembl account. You will be able to save the results indefinitely. Analyse your own variants and predict the functional consequences of known and unknown variants via our Variant Effect Predictor (VEP) tool. For larger datasets we provide an API script that can be downloaded (you will also need to install our Perl API, below, to run the script).

2

What's New in this release

http://dec2015.archive.ensembl.org/info/website/news.html

Pairwise Interactions File Formats. Coordinate Systems for custom tracks. Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Browse News by Topic. What's New in this release. Archives: Table of assemblies. What's New in this release. News for Ensembl Archive Release 83 (December 2015). New web displays and tools. New species, assemblies and genebuilds. API and schema changes. New web displays and tools. In addition, row counts for ...

3

Compare genes across species

http://dec2015.archive.ensembl.org/info/website/tutorials/compara.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. Compare genes across species. Compare genes across species. Gene Trees and Homologues. A representative protein for every gene in Ensembl across all species is used to determine gene trees. Homologues are separated into Orthologues. Across different species) and Paralogues. Gene Tree help page. Gene trees and homology. Compare species in the genomic alignment view.

4

ENCODE data in Ensembl

http://dec2015.archive.ensembl.org/info/website/tutorials/encode.html

Compare genes across species. Variants for my gene. ENCODE data in Ensembl. The GRCh37 assembly in Ensembl. Use my own data. ENCODE data in Ensembl. ENCODE data in Ensembl. ENCODE data in Ensembl. How to view ENCODE data. Multiple data tracks relating to gene regulation, based on ENCODE data can be turned on in the ' region in detail. Page on our GRCh37 archive for human and mouse. A full tutorial on how to use these tracks. Is available on the EMBL-EBI website. Link to add ENCODE integrative analysis hub.

5

Help & Documentation

http://dec2015.archive.ensembl.org/info

Browse News by Topic. What's New in this release. Exporting data via website. How Ensembl uses DAS. DAS (Distributed Annotation System). About the Ensembl Project. Credits for species images. Our website offers lots of ways to view and interact with our genomic data - find out more! The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. All of our data is open-access and can be downloaded free of charge ( disclaimer.

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LINKS TO THIS WEBSITE

grch37.ensembl.org grch37.ensembl.org

Help - Homo sapiens - GRCh37 Archive browser 86

http://grch37.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014.

asia.ensembl.org asia.ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://asia.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

mar2015.archive.ensembl.org mar2015.archive.ensembl.org

Ensembl genome browser 79: Homo sapiens - - Help

http://mar2015.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 86: Oct 2016. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014.

jul2015.archive.ensembl.org jul2015.archive.ensembl.org

Ensembl genome browser 81: Homo sapiens - - Help

http://jul2015.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 86: Oct 2016. Ensembl 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014.

ensembl.org ensembl.org

Archives

http://www.ensembl.org/info/website/archives/index.html

Archives: Table of assemblies. List of currently available archives. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 85: Jul 2016. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. Ensembl 80: May 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. Ensembl 76: Aug 2014. Ensembl 75: Feb 2014. Ensembl 74: Dec 2013. Ensembl 73: Sep 2013. Ensembl 67: May 2012. Ensembl 54: May 2009. Table of archives showing assemblies present in each one.

gencodegenes.org gencodegenes.org

GENCODE - Release History

http://www.gencodegenes.org/mouse_releases

How to Access Data. The Mouse GENCODE Gene Set - Release history. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. M9 (current for GRCm38). Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Merge between Havana annotation and Ensembl gene set in GRCm38 assembly. Month of the Havana data cutoff.

gencodegenes.org gencodegenes.org

GENCODE - Release History

http://www.gencodegenes.org/releases

How to Access Data. The Human GENCODE Gene Set - Release history. Re-merge with new Havana annotation, updated Ensembl gene set. 24 (current for GRCh38). Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Re-merge with new Havana annotation, updated Ensembl gene set. Full new Ensembl gene build and merge with Havana in GRCh38. 19 (current for GRCh37). Automated merge o...

useast.ensembl.org useast.ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://useast.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

ensembl.org ensembl.org

Help - Homo sapiens - Ensembl genome browser 85

http://www.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Ensembl 84: Mar 2016. Ensembl 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Ensembl 82: Sep 2015. Ensembl 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Ensembl 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015. Ensembl 79: Mar 2015. Ensembl 78: Dec 2014. Ensembl 77: Oct 2014. GRCh38) - patched/updated gene set Aug 2014. Ensembl 76: Aug 2014.

aug2014.archive.ensembl.org aug2014.archive.ensembl.org

Ensembl genome browser 76: Homo sapiens - - Help

http://aug2014.archive.ensembl.org/Help/ArchiveList

The following archives are available for this page:. Full Feb 2014 archive with BLAST, VEP and BioMart. Archive EnsEMBL 86: Oct 2016. Archive EnsEMBL 85: Jul 2016. GRCh38.p7) - patched/updated gene set Jun 2016. Archive EnsEMBL 84: Mar 2016. Archive EnsEMBL 83: Dec 2015. GRCh38.p5) - patched/updated gene set Oct 2015. Archive EnsEMBL 82: Sep 2015. Archive EnsEMBL 81: Jul 2015. GRCh38.p3) - patched/updated gene set Jun 2015. Archive EnsEMBL 80: May 2015. GRCh38.p2) - patched/updated gene set Jan 2015.

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Ensembl genome browser 83

Or coronary heart disease. The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Chinese softshell turtle (. Lesser hedgehog tenrec (. Middot; Restore default list. Log in to customize this list. Select a species -. View full list of all Ensembl species. Other species are available in Ensembl. Still using Human GRCh37? Ensembl...

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