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Infernal: inference of RNA alignments

Infernal: inference of RNA alignments. Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called. The latest release of Infernal is 1.1.1 [23 July 2014]. User's Guide [PDF, 125 pages]. From the current release. For the current release. The current source code distribution: infernal 1.1.1, source only [tarball, 19.5 MB]. Infernal is freely available.

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Infernal: inference of RNA alignments | infernal.janelia.org Reviews

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Infernal: inference of RNA alignments. Infernal (INFERence of RNA ALignment) is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called. The latest release of Infernal is 1.1.1 [23 July 2014]. User's Guide [PDF, 125 pages]. From the current release. For the current release. The current source code distribution: infernal 1.1.1, source only [tarball, 19.5 MB]. Infernal is freely available.

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1 infernal home

2 rfam database

3 eddy lab

4 janelia farm

5 overview

6 covariance models

7 documentation

8 readme

9 release notes

10 reference

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Infernal: inference of RNA alignments | infernal.janelia.org Reviews

https://infernal.janelia.org

Infernal: inference of RNA alignments. Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called. The latest release of Infernal is 1.1.1 [23 July 2014]. User's Guide [PDF, 125 pages]. From the current release. For the current release. The current source code distribution: infernal 1.1.1, source only [tarball, 19.5 MB]. Infernal is freely available.

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wernerlab.org

MacQIIME - Werner Lab

http://www.wernerlab.org/software/macqiime

MacQIIME 1.9.1 20150604 OS10.7. QIIME 1.9.1 June 4. The file (don't open it with the Archive Unitility) and follow the install instructions. The above package will only work on Mac OS X versions 10.7 and up. An easy way to use QIIME on Mac OS X. MacQIIME is a precompiled installation of QIIME. The QIIME source code was developed by the Knight Lab. And others. Since MacQIIME includes this as well as many other software packages, here is a guide to some common references you may want to cite. QIIME (curren...

cryptogenomicon.org

Cryptogenomicon | Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab | Page 2

https://cryptogenomicon.org/page/2

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Newer posts →. HMMER mission control: we are go for launch vehicle separation(s). June 2, 2015. Were officially launched today. At the EMBL European Bioinformatics Institute (EBI). In Cambridge UK. You can read an EBI press release here. This marks the completion of the pilot HMMER server project at Janelia Farm and its transition to the EBI. All of this has been led by Rob Finn,. Because of the terrifyingly sophisticated ...

cryptogenomicon.org

Reboot | Cryptogenomicon

https://cryptogenomicon.org/2014/09/19/reboot

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. September 19, 2014. In July 2015, our laboratory will move to Harvard University. I’ve accepted an offer to join Harvard’s faculty in two departments: Molecular and Cellular Biology. In the Faculty of Arts and Sciences), and Applied Mathematics. We will have been at Janelia Farm. At Harvard, with support from the Howard Hughes Medical Institute. We’re going to continue our new work in neuroscience too (well, genomics...

cryptogenomicon.org

Janelia Farm | Cryptogenomicon

https://cryptogenomicon.org/category/janelia-farm

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Category Archives: Janelia Farm. September 11, 2014. Belated congratulations to Rob Finn, who has moved to EMBL-EBI to lead the Protein Families team. The HMMER web services pilot project. That HHMI has funded at Janelia, under Rob’s leadership, is now in transition to EBI, and Rob and I will write more about this in the future. This fall. The nhmmer software project and his lead role in the Dfam mobile element database.

cryptogenomicon.org

Congratulations | Cryptogenomicon

https://cryptogenomicon.org/category/congratulations

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. September 11, 2014. Belated congratulations to Rob Finn, who has moved to EMBL-EBI to lead the Protein Families team. The HMMER web services pilot project. That HHMI has funded at Janelia, under Rob’s leadership, is now in transition to EBI, and Rob and I will write more about this in the future. This fall. The nhmmer software project and his lead role in the Dfam mobile element database. It’s getting a little underp...

rdp.cme.msu.edu

RDP Release Notes

http://rdp.cme.msu.edu/misc/rel10info.jsp

Ribosomal Database Project Release 11. Please note the RDP License Agreement and how to cite services from this site. RDP Release 11 Notes. Notes and Clarifications About RDP. Release 11 Update History. RDP Release 11 Notes. RDP Release 11 provides many significant enhancements over RDP release 10:. New Data Collection- Fungal 28S rRNA Sequences. New and Updated Alignment. This aligner has several advantages: it incorporates secondary-structure information into the alignment process; as a model-based ali...

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infernal.janelia.org

Infernal: inference of RNA alignments

Infernal: inference of RNA alignments. Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called. The latest release of Infernal is 1.1.1 [23 July 2014]. User's Guide [PDF, 125 pages]. From the current release. For the current release. The current source code distribution: infernal 1.1.1, source only [tarball, 19.5 MB]. Infernal is freely available.

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