intermine.modencode.org
modMine: HomeIntegrated database for Drosophila melanogaster and Caenorhabditis elegans genomics
http://intermine.modencode.org/
Integrated database for Drosophila melanogaster and Caenorhabditis elegans genomics
http://intermine.modencode.org/
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modMine: Home | intermine.modencode.org Reviews
https://intermine.modencode.org
Integrated database for Drosophila melanogaster and Caenorhabditis elegans genomics
intermine.modencode.org
modMine: Home
http://intermine.modencode.org/release-33/flyRegulatoryNetwork.do
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
modMine: Template queries page
http://intermine.modencode.org/release-33/templates.do
A data warehouse for the modENCODE project. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Histone modification and replacement. Enter a new List name:. You are not logged in. Log in. To mark items as favourites.
modMine: Home
http://intermine.modencode.org/release-33/bag.do
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
modMine: Home
http://intermine.modencode.org/release-33/api.do
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
modMine: Home
http://intermine.modencode.org/release-33/spanUploadOptions.do
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
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Micklem Lab | University of Cambridge
http://www.micklemlab.org/funding
InterMine and HumanMine: enhancing the biomedical relevance of model organisms and enabling other data mining projects. The development of a comprehensive data warehouse for human genetics, genomics and proteomics. InterMOD: integrated data and tools to support model organism research. Integrated data and tools to support cross-organism research in major model organisms including yeast, worm, fly, mouse, rat and zebrafish. Integrated data and tools for the Common Metabolic Disease research community.
Micklem Lab | University of Cambridge
http://www.micklemlab.org/projects/data-integration
Bdelloid rotifers are microscopic animals that reproduce asexually and are able to survive dessication. As such, their genomes contain unique adaptations, some of which are the focus of this project. A project in collaboration with Alan Tunnacliffe. Genomics of coral reefs. We are sequencing the dinoflagellate ( Symbiodinium. And the host Stylophora. Genomes, in order to study symbiotic interactions of coral reefs, as well as host-parasite dynamics. Toxoplasma: parasitic subversion of host function.
Micklem Lab | University of Cambridge
http://www.micklemlab.org/resources
An open source data warehouse system, produced by the Micklem Lab. Created specifically with the challenges of large scale biological data integration in mind, InterMine offers an easily extensible data model, optimised flexible querying, a user-friendly web interface and web service APIs for programmatic data access, as well as statistical analysis tools. Find out more at www.intermine.org. Or get the code on GitHub. ModMine provides users with access to tools for data browsing and basic analysis, and a...
Micklem Lab | University of Cambridge
http://www.micklemlab.org/funding/modencode
InterMine and HumanMine: enhancing the biomedical relevance of model organisms and enabling other data mining projects. The development of a comprehensive data warehouse for human genetics, genomics and proteomics. InterMOD: integrated data and tools to support model organism research. Integrated data and tools to support cross-organism research in major model organisms including yeast, worm, fly, mouse, rat and zebrafish. Integrated data and tools for the Common Metabolic Disease research community.
modENCODE
http://www.modencode.org/publications/about/index.shtml
The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. The goal of the modENCODE project. Is to provide the biological research community with a comprehensive encyclopedia of genomic functional elements in the model organisms C. elegans. ModENCODE is run as a Research Network. The raw and interpreted data from this project is vetted by a data coordinating center (DCC). In December 20...
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Intermine
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intermine.legumefederation.org
LegumeMine: Home
A mine with data for several organisms from LIS and other sources. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. This mine integrates data for multiple legume species, currently string bean. It is currently under development by LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) as well as exports from other sources (e.g. LIS, Soybase, Peanutbase). Contact Sam Hokin: shokin at ncgr dot org. Introns have been added.
modMine: Home
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
InterMine
Which InterMine for my organism? Developer docs and getting started. Publications and citing us. Disparate data in, unified data out. InterMine integrates biological data sources, making it easy to query and analyse data. InterMine is open source. LGPL 2.1) and free to use. It's a software system that you can install on your own servers. To make data available on the web. There are many different InterMines worldwide, covering a broad range of model organisms and life science research areas.
InterMine documentation (latest) — InterMine documentation
Enter search terms or a module, class or function name. InterMine is an open source data warehouse build specifically for the integration and analysis of complex biological data. This guide in a PDF format. Tutorial - Configure your InterMine webapp! How to set up your InterMine environment on the Amazon Cloud. Using Class and Field Labels. Querying over genomic ranges. Guide to Customising your Web Application. Linking in to your mine. API and Client Libraries. InterMine JavaScript API Loader.
InterMine – Open source data warehouse system for the integration and analysis of biological data.
Open source data warehouse system for the integration and analysis of biological data. Follow Blog via Email. Enter your email address to follow this blog and receive notifications of new posts by email. Join 302 other followers. Where to find us. Systems Biology Centre,. Tennis Court Road,. CB2 1QR, UK. View intermineorg’s profile on Twitter. View intermine’s profile on GitHub. The annual InterMine office closure will be between 23. December evening until 3. See you all in 2017! Query name="employeeDepa...
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