modencode.org

modENCODE

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. A hierarchical view of regulatory networks. For fly and worm. Your genomic regions and search for features found by the modENCODE. Your list of fly genes and view an expression score heatmap. The entire modENCODE data set available for analysis in the Amazon compute cloud. Find, view and download datasets in bulk. Developmental s...

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modENCODE | modencode.org Reviews

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The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. A hierarchical view of regulatory networks. For fly and worm. Your genomic regions and search for features found by the modENCODE. Your list of fly genes and view an expression score heatmap. The entire modENCODE data set available for analysis in the Amazon compute cloud. Find, view and download datasets in bulk. Developmental s...

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modENCODE | modencode.org Reviews

https://modencode.org

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. A hierarchical view of regulatory networks. For fly and worm. Your genomic regions and search for features found by the modENCODE. Your list of fly genes and view an expression score heatmap. The entire modENCODE data set available for analysis in the Amazon compute cloud. Find, view and download datasets in bulk. Developmental s...

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intermine.modencode.org

modMine: Home

A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!

data.modencode.org

Faceted Search of modENCODE Data Sets

Search modENCODE Data Sets. Internet Explorer users: If this page is too slow for you, consider Firefox, Safari or Chrome. Please do not abort script execution.

gbrowse.modencode.org

D. melanogaster Genomic Browser: 57 kbp from 2L:123,000..180,000

Help with this browser. Show my user ID. Log in / create account. D melanogaster Genomic Browser: 57 kbp from 2L:123,000.180,000. Download Decorated FASTA File. C elegans Genomic Browser. D melanogaster Genomic Browser. ModENCODE C.brenneri DB. ModENCODE C.briggsae DB. ModENCODE C.japonica DB. ModENCODE C.remanei DB. ModENCODE D.ananassae DB. ModENCODE D.mojavensis DB. ModENCODE D.pseudoobscura DB. ModENCODE D.simulans DB. ModENCODE D.virilis DB. ModENCODE D.yakuba DB. Show Active Tracks Only. Dosage com...

wiki.modencode.org

Error

This is a private WIKI for the modENCODE. Project. You must log in. To view other pages. If you have been directed here to view information about a public modENCODE experiment, please click here:. Retrieved from " http:/ wiki.modencode.org/project/index.php/Main Page.

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modencode.org

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modENCODE

http://www.modencode.org/publications/pubs/index.shtml

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. Publications of the modENCODE project. This is a collection of publications connected to the project. If you note any omission or mistake please contact us at help@modencode.org. Salt fractionation of nucleosomes for genome-wide profiling. Teves et al, Methods Mol Biol. 2012;833:421-32. Identification and experimental validation ...

2

modENCODE

http://www.modencode.org/publications/about/index.shtml

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. The goal of the modENCODE project. Is to provide the biological research community with a comprehensive encyclopedia of genomic functional elements in the model organisms C. elegans. ModENCODE is run as a Research Network. The raw and interpreted data from this project is vetted by a data coordinating center (DCC). In December 20...

3

modENCODE

http://www.modencode.org/publications/docs/index.shtml

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. ModENCODE Data Quality Standards. These documents describe project-wide quality control standards applied to specific modENCODE experiment types. QC Standards for chromatin IP ( ChIP-chip. QC Standards for whole genome shotgun sequencing ( RNA-seq. QC Standards for RNA-binding protein immunoprecipitation ( RIP.

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fb2008_09.flybase.org

FlyBase: RNA-Seq Overview

http://www.fb2008_09.flybase.org/static_pages/rna-seq/RNA-Seq.html

Preview the FlyBase 2.0 website. FB2017 01, released February 14, 2017. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. GBrowse Genome Annotation Viewer. For more help with FlyBase GBrowse, see this help page. Use this s...

fb2012_06.flybase.org

FlyBase: New Person Form

http://www.fb2012_06.flybase.org/static_pages/people/fbpeopleadd3.html

Preview the FlyBase 2.0 website. FB2017 01, released February 14, 2017. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Please enter your contact information. Not applicable (not in the US). AS - AMERICAN SAMOA. Virgin I...

fb2014_04.flybase.org

FlyBase: Inquiries and feedback

http://www.fb2014_04.flybase.org/cgi-bin/mailto-fbhelp.html

Preview the FlyBase 2.0 website. FB2017 01, released February 14, 2017. A Database of Drosophila. Add A New Person. New In This Release. Emsp;used by FlyBase. Gene Model Annotation Guidelines (2012). Gene Model Annotation Guidelines (2007). What does the annotation evidence score mean? Classification of gene products. Emsp;using Gene Ontology (GO) terms. Computed feature type of genes. Dmel R5.57 Archive. Please fill in the following details:. Please select one of these subjects. Problem with web server.

wiki.modencode.org

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http://wiki.modencode.org/project/index.php/Working_Groups

This is a private WIKI for the modENCODE. Project. You must log in. To view other pages. If you have been directed here to view information about a public modENCODE experiment, please click here:. Retrieved from " http:/ wiki.modencode.org/project/index.php/Working Groups.

wiki.modencode.org

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http://wiki.modencode.org/project/index.php/DCC_Meetings

This is a private WIKI for the modENCODE. Project. You must log in. To view other pages. If you have been directed here to view information about a public modENCODE experiment, please click here:. Retrieved from " http:/ wiki.modencode.org/project/index.php/DCC Meetings.

gep.wustl.edu

External Resources | Genomics Education Partnership

http://gep.wustl.edu/curriculum/external_resources

Skip to main content. Sponsored by Washington University in St. Louis, HHMI and NSF. This page contains links to publicly available bioinformatics tutorials and other training materials. Links to External Resources. Bioinformatics Tutorial Series (BITS). Video tutorials on using the UCSC Genome Browser, BLAST and NCBI Entrez. Educational Resources for Epigenetics. Video on Epigenetics, which provides the same material in a 13 minute video narrated by Neil deGrasse-Tyson. Note that the chromatin model...

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modencode.org

modENCODE

The National Human Genome Research Institute. The modENCODE Project will try to identify all of the sequence-based functional elements in the Caenorhabditis elegans. Genomes. ”. A hierarchical view of regulatory networks. For fly and worm. Your genomic regions and search for features found by the modENCODE. Your list of fly genes and view an expression score heatmap. The entire modENCODE data set available for analysis in the Amazon compute cloud. Find, view and download datasets in bulk. Developmental s...

modencode.sciencemag.org

Science/AAAS and modENCODE | modENCODE Education Suppplement

Model Organisms and Modern Biology An educational portal from the modENCODE Project. Module 1: Model Organisms in Biology. Why we study flies and worms to learn about humans - and what we've learned so far. [More info]. The lowly fruit fly - easy to grow and maintain, with giant chromosomes and some surprising genetic similarities to humans - has been at the core of biological research for more than 100 years. Module 2: Model Organisms and Gene Expression. Module 3: The Role of Computers and Technology.

modencode.scimagdev.org

Science/AAAS and modENCODE | modENCODE Education Suppplement

Model Organisms and Modern Biology An educational portal from the modENCODE Project. Module 1: Model Organisms in Biology. Why we study flies and worms to learn about humans - and what we've learned so far. [More info]. The lowly fruit fly - easy to grow and maintain, with giant chromosomes and some surprising genetic similarities to humans - has been at the core of biological research for more than 100 years. Module 2: Model Organisms and Gene Expression. Module 3: The Role of Computers and Technology.

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