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Manu V. Tamminen | Single cell microbiologist

I am a molecular biologist specialising in genomics of single cells and microscopic cell communities. My research directions include... Determining "who is doing what" in very complex microbial communities. My current focus is on genes for elemental cycles and antibiotic resistance. The research builds on our recently published epicPCR methodology. The figure is adapted from Spencer, Tamminen et al (2016), released under CC…

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Manu V. Tamminen | Single cell microbiologist | manutamminen.info Reviews
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I am a molecular biologist specialising in genomics of single cells and microscopic cell communities. My research directions include... Determining who is doing what in very complex microbial communities. My current focus is on genes for elemental cycles and antibiotic resistance. The research builds on our recently published epicPCR methodology. The figure is adapted from Spencer, Tamminen et al (2016), released under CC…
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Manu V. Tamminen | Single cell microbiologist | manutamminen.info Reviews

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I am a molecular biologist specialising in genomics of single cells and microscopic cell communities. My research directions include... Determining "who is doing what" in very complex microbial communities. My current focus is on genes for elemental cycles and antibiotic resistance. The research builds on our recently published epicPCR methodology. The figure is adapted from Spencer, Tamminen et al (2016), released under CC…

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Unix one-liners | Manu V. Tamminen

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Manu V. Tamminen. Reverse complement all sequences in a fasta file. Paste -d n (grep sequences.fasta) (grep -v sequences.fasta tr ATGC TACG rev) reverse complemented sequences.fasta. Prepare a stability file. From paired end reads. Paste (ls *R1*.fastq awk -F '{print $1}') (ls *R1*.fastq) (ls *R2*.fastq) stability.txt. Assumes that a comma can be used as a line separator. Cat file.fastq paste -d, - - - - awk -F, '{print $1 n $2 n}' file.fasta. Remove line breaks in a. File Credit goes to this thread.

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Publications | Manu V. Tamminen

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Manu V. Tamminen. Krismer, J., Tamminen, M. Fontana, S., Zenobi, R. and Narwani. A. (2016) Single-cell mass spectrometry reveals the importance of genetic diversity and plasticity for phenotypic variation in nitrogen limited. ISME Journal. Accepted. Brito, I. L., Yilmaz, S., Huang, K., Xu, L., Jupiter, S.D., Jenkins, A.P., Naisilisili, W. Tamminen, M. Spencer, S.*, Tamminen, M. Equal contribution. More details available at protocol exchange. Pärnänen, K., Karkman, A., Tamminen, M. Tiedje, J and Virta, M&...

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In non-scientific media | Manu V. Tamminen

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Manu V. Tamminen. 1922015. In Finnish. 582014. In Finnish. Click to share on Twitter (Opens in new window). Share on Facebook (Opens in new window). Click to share on Google (Opens in new window). 2017 Manu V. Tamminen. Blog at WordPress.com.

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Blog | Manu V. Tamminen | Single cell microbiologist

https://manutamminen.info/blog

Manu V. Tamminen. The concise syntax of Awk permits extremely powerful one-liners. The first example in this entry describes constructing a stability file for Mothur, described here. You can test everything described in this entry using this example data set. After uncompressing the data set, check the fastq files in the directory using. You should see the following:. F3D0 F3D0 S188 L001 R1 001.fastq F3D0 S188 L001 R2 001.fastq F3D141 F3D141 S207 L001 R1 001.fastq F3D141 S207 L001 R2 001....Columns two a...

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The human microbiome plays a key role in human health and disease. Research in my group includes both computational/theoretical and experimental approaches to understanding and engineering the human microbiome. Our research is focused on translating basic science discoveries rapidly into the clinic, where they can contribute to better outcomes for patients. Some areas of special interest include:. Developing therapeutics based on synthetic microbial communities. Smart Toilets that track human health.

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The human microbiome plays a key role in human health and disease. Research in my group includes both computational/theoretical and experimental approaches to understanding and engineering the human microbiome. Our research is focused on translating basic science discoveries rapidly into the clinic, where they can contribute to better outcomes for patients. Some areas of special interest include:. Developing therapeutics based on synthetic microbial communities. Smart Toilets that track human health.

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Tareas digitales de manu. Jueves, 1 de diciembre de 2016. Enviar por correo electrónico. Viernes, 25 de noviembre de 2016. Esta es mi oportunidad para demostrar que soy igual que todos. Si mato a ese unicornio me aceptaran.- Pensaba Jazmin. Pero cuando Jazmín se acercó el adorable unicornio, él se apoderó de su corazón. Ella no tuvo el valor suficiente como para matar ese animal indefenso. Fue así como ella ayudo al pobre unicornio a salir. Para qué seguir sufriendo? Enviar por correo electrónico. Por qu...

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Manu V. Tamminen | Single cell microbiologist

Manu V. Tamminen. I am a molecular biologist specialising in genomics of single cells and microscopic cell communities. My research directions include…. Determining “who is doing what” in very complex microbial communities. My current focus is on genes for elemental cycles and antibiotic resistance. The research builds on our recently published epicPCR methodology. The figure is adapted from Spencer, Tamminen et al (2016). Released under CC BY 4.0. Methodology. Read more here. Mobile genes in the human m...

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