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Arno Klein
116 Pin●●●●●●● Avenue
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US
View this contact
Sage Bionetworks
Arno Klein
116 Pin●●●●●●● Avenue
N●Y , NY, 10033
US
View this contact
Sage Bionetworks
Arno Klein
116 Pin●●●●●●● Avenue
N●Y , NY, 10033
US
View this contact
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Mindboggle | mindboggle.info Reviews
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Mindboggle
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Mindboggle-101
http://www.mindboggle.info/data.html
Data related to the Mindboggle project (example input, output, and test data, templates, atlases, papers, posters, etc.) are all available in Mindboggle's Open Science Framework page. Zip), used by antsCorticalThickness.sh during preprocessing. Mindboggle-100 surface atlas (coming soon.), used internally by FreeSurfer during preprocessing. OASIS-TRT-20 joint fusion atlas. Used internally by Mindboggle for volume labeling. The following article describes the brains and labels.
Mindboggle Papers
http://www.mindboggle.info/papers.html
Papers related to Mindboggle. Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimer's and Dementia. 12(6): 645-653. PMID: 27079753. DOI: dx.doi.org/10.1016/j.jalz.2016.02.006. Alzheimer's Disease Challenge website. A Klein, J Tourville. 2012. 101 labeled brain images and a consistent human cortical labeling protocol. Frontiers in Brain Imaging Methods. 6:171 dx.doi.org/10.3389/fnins.2012.00171. And Open Science Framework repository. A Klein, J Hirsch. 2005. A Klein...
Mindboggle People
http://www.mindboggle.info/people.html
People contributing to Mindboggle. Mindboggle is an open source community project with a growing list of software contributors (ordered chronologically):. Satra [at] mit.edu. Nipype and informatics guidance. Forrest.bao [at] gmail.com. VTK i/o, spectra port [1], MST fundi. Joachimgiard [at] gmail.com. C surface shapes (depth, curvature). Yrjö Häme. Yrjohame [at] gmail.com. Elistavsky [at] gmail.com. Nl2168 [at] gmail.com. Deep learning and graph-based database tests. Br [at] f0cal.com. A Research Scienti...
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Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/genindex.html
AntsApplyTransformsToPoints() (in module mindboggle.thirdparty.ants). Apply affine transforms() (in module mindboggle.mio.vtks). Area() (in module mindboggle.shapes.surface shapes). Area normalize() (in module mindboggle.shapes.laplace beltrami). Area of faces() (in module mindboggle.guts.mesh). Boxplots of lists() (in module mindboggle.mio.plots). Brainstem colors (DKTprotocol attribute). Brainstem list (DKTprotocol attribute). Brainstem names (DKTprotocol attribute). Cerebrum noncortex names (DKTprotoc...
GrokHome | Building the world's most interesting hacker houses
http://www.grokhome.com/index.html
Hi, we're GrokHome. We are building the world's most interesting hacker houses. Our single focus is to create and provide a supportive environment for smart people working on interesting projects, start ups and more. Whether you're visiting Seattle for a Codefellows Bootcamp, interning at Amazon, launching a mobile app or doing world changing medical research - we think we have created the perfect place to help you succeed. Check out our newest location, Romero House. In the University District! Romero H...
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/py-modindex.html
160; . 160; . Mindboggle.evaluate.evaluate features. 160; . Mindboggle.evaluate.evaluate labels. 160; . Mindboggle.evaluate.evaluate shapes. 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . Mindboggle.mio.convert volumes. 160; . Mindboggle.mio.fetch data. 160; . 160; . 160; . 160; . 160; . 160; . Mindboggle.shapes.laplace beltrami. 160; . 160; . Mindboggle.shapes.surface shapes. 160; . 160; . 160; . 160; .
Arno Klein's binarybottle.com!
http://www.binarybottle.com/projects.html
I was the scientific lead on the mPower mobile health research study that tracks symptoms of Parkinson disease in thousands of participants. I helped map symptoms to sensors in the design of the mPower app. A mobile phone application that collects voice, accelerometer, and tapping data. This was one of the first research applications built on top of Apple's new open source ResearchKit platform. I built the mhealthx. Software pipeline for extracting features from such mobile health data. I am the lead dev...
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/labels.html
What are the labels Mindboggle uses? Mindboggle uses labels from complementary labeling protocols:. Desikan-Killiany-Tourville cortical labeling protocol. 101 labeled brain images and a consistent human cortical labeling protocol. Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171. DOI: 10.3389/fnins.2012.00171. FreeSurfer’s wmparc aseg non-cortical ( white matter) labels. Below are lists of brain label names and numbers that can be generated by this program. Apache v2.0 License.
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/faq.html
Frequently asked questions about Mindboggle. How long does it take to run Mindboggle? What are the labels Mindboggle uses? DKT cortical labeling protocol (31 labels). Noncortex label numbers and names. Sulcus names from the DKT labeling protocol (callosal sulcus removed). Lists of label pairs that define DKT sulcus boundaries. Regions bounded by sulcal fundi. Boundaries that will NEVER be derived by fundi. Possible ways to combine or eliminate regions (from Jason Tourville’s notes).
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/license.html
Except where otherwise noted, all Mindboggle software is licensed under the Apache v2.0. Except where otherwise noted, all Mindboggle documentation is licensed under a Creative Commons Attribution 3.0 License. All code fragments in the documentation are licensed under our software license. Previous: What are the labels Mindboggle uses?
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mindbogaler (corey) - DeviantArt
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Mind- Boggling
With technology’s boom in the twenty-first century encouraging the public to become users of social networks and owners of cellular devices, people have become accustom to living in a society where everything is instantaneous. A smartphone user (source: Pixabay). Editor of PhoneDog Anna Scatlin shares how the introduction of Apple’s FaceTime as well as other applications, like Skype. Has exponentially grown over the past year. Although the want for attention is a natural feeling that arises in all hu...
Mindboggld's Blog | Just another WordPress.com weblog
Just another WordPress.com weblog. December 3, 2008. Please go to my real site. This site is so I can comment on some blogs that require a name.wordpress.com address, but my blog is located at KandraYoung.com. Blog at WordPress.com.
mindboggle.com
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Mindboggle
The Mindboggle project's mission is to improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data. We promote open science by making all software, data, and documentation freely and openly available. Label, extract features, and analyze shapes of human brain image data. Atlases, templates, and the largest collection of publicly available, manually labeled human brains! Articles and conference proceedings related to Mindboggle.
Mindboggle — Mindboggle 1.0.0 documentation
The Mindboggle software package automates shape analysis of anatomical labels and features extracted from human brain magnetic resonance image data. Mindboggle can be run as a single command, and can be installed as a cross-platform Docker container for convenience and reproducibility of results. Behind the scenes, open source Python 3 and C code run within a modular Nipype pipeline framework on Linux (tested with Python 3.5 on Ubuntu 14.04). December 03, 2016. Support, bugs, and help. 3 Set the path on ...
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