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Mindboggle — Mindboggle 1.0.0 documentationMindboggle
http://mindboggle.readthedocs.io/
Mindboggle
http://mindboggle.readthedocs.io/
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Mindboggle — Mindboggle 1.0.0 documentation | mindboggle.readthedocs.io Reviews
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Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/license.html
Except where otherwise noted, all Mindboggle software is licensed under the Apache v2.0. Except where otherwise noted, all Mindboggle documentation is licensed under a Creative Commons Attribution 3.0 License. All code fragments in the documentation are licensed under our software license. Previous: What are the labels Mindboggle uses?
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/faq.html
Frequently asked questions about Mindboggle. How long does it take to run Mindboggle? What are the labels Mindboggle uses? DKT cortical labeling protocol (31 labels). Noncortex label numbers and names. Sulcus names from the DKT labeling protocol (callosal sulcus removed). Lists of label pairs that define DKT sulcus boundaries. Regions bounded by sulcal fundi. Boundaries that will NEVER be derived by fundi. Possible ways to combine or eliminate regions (from Jason Tourville’s notes).
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/labels.html
What are the labels Mindboggle uses? Mindboggle uses labels from complementary labeling protocols:. Desikan-Killiany-Tourville cortical labeling protocol. 101 labeled brain images and a consistent human cortical labeling protocol. Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171. DOI: 10.3389/fnins.2012.00171. FreeSurfer’s wmparc aseg non-cortical ( white matter) labels. Below are lists of brain label names and numbers that can be generated by this program. Apache v2.0 License.
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/py-modindex.html
160; . 160; . Mindboggle.evaluate.evaluate features. 160; . Mindboggle.evaluate.evaluate labels. 160; . Mindboggle.evaluate.evaluate shapes. 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . 160; . Mindboggle.mio.convert volumes. 160; . Mindboggle.mio.fetch data. 160; . 160; . 160; . 160; . 160; . 160; . Mindboggle.shapes.laplace beltrami. 160; . 160; . Mindboggle.shapes.surface shapes. 160; . 160; . 160; . 160; .
Mindboggle — Mindboggle 1.0.0 documentation
http://mindboggle.readthedocs.io/en/latest/genindex.html
AntsApplyTransformsToPoints() (in module mindboggle.thirdparty.ants). Apply affine transforms() (in module mindboggle.mio.vtks). Area() (in module mindboggle.shapes.surface shapes). Area normalize() (in module mindboggle.shapes.laplace beltrami). Area of faces() (in module mindboggle.guts.mesh). Boxplots of lists() (in module mindboggle.mio.plots). Brainstem colors (DKTprotocol attribute). Brainstem list (DKTprotocol attribute). Brainstem names (DKTprotocol attribute). Cerebrum noncortex names (DKTprotoc...
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Mindboggle
The Mindboggle project's mission is to improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data. We promote open science by making all software, data, and documentation freely and openly available. Label, extract features, and analyze shapes of human brain image data. Atlases, templates, and the largest collection of publicly available, manually labeled human brains! Articles and conference proceedings related to Mindboggle.
Mindboggle — Mindboggle 1.0.0 documentation
The Mindboggle software package automates shape analysis of anatomical labels and features extracted from human brain magnetic resonance image data. Mindboggle can be run as a single command, and can be installed as a cross-platform Docker container for convenience and reproducibility of results. Behind the scenes, open source Python 3 and C code run within a modular Nipype pipeline framework on Linux (tested with Python 3.5 on Ubuntu 14.04). December 03, 2016. Support, bugs, and help. 3 Set the path on ...
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