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Mammalian Transcriptomic Database

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/

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Mammalian Transcriptomic Database | mtd.cbi.ac.cn Reviews
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Mammalian Transcriptomic Database
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2 transcriptome
3 transcripts
4 pig
5 rat
6 human
7 mouse
8 isoforms
9 exons
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Mammalian Transcriptomic Database | mtd.cbi.ac.cn Reviews

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Mammalian Transcriptomic Database

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1

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/browse.php

Please click a chromosome. Please click a chromosome. Please contact us for any questions or suggestions about our database. Or xiaojingfa@big.ac.cn. Beijing Institute of Genomics, Chinese Academy of Sciences.

2

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/tutorial.php

How to use the MTD database? 11 Browse by Chromosome. 12 Browse by Region. 13 Browse by Pathway. 21 Search by Gene Feature. 22 Search by Isoform Feature. Mozilla Firefox (31.0 or last versions). Apple Safari (5.1 or last versions). Google Chrome (35.0 or last versions). Microsoft Internet Explorer (11.0 or last versions). Please contact us for any questions or suggestions about our database. Or xiaojingfa@big.ac.cn. Beijing Institute of Genomics, Chinese Academy of Sciences.

3

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/pipeline.php

Filtering raw RNA-seq samples and preprocessing. A All raw RNA-seq data were chosen from healthy samples without any special treatments in the public database SRA. Five criteria are considered as follows:. 1) Only selecting samples under normal conditions and removing tissues/cell lines with special treatments to avoid different regulation mechanisms under diverse physiological conditions. 2) Removing all mixed tissue/cell line samples that might mask the real differences among samples. Read mapping, tra...

4

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/statistics.php

Data details and sources. Please contact us for any questions or suggestions about our database. Or xiaojingfa@big.ac.cn. Beijing Institute of Genomics, Chinese Academy of Sciences.

5

Mammalian Transcriptomic Database

http://mtd.cbi.ac.cn/housekeeping.php

RPKM is reads per kilobase of coding sequence per million mappable reads, which represents gene/isoform expression level. CV is abbreviated from coefficient of variation, which stands for the fluctuation of gene/isoform expression levels across tissues. Please contact us for any questions or suggestions about our database. Or xiaojingfa@big.ac.cn. Beijing Institute of Genomics, Chinese Academy of Sciences.

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alz.big.ac.cn alz.big.ac.cn

AlzBase

http://alz.big.ac.cn/alzBase/aboutus

Eb service for B. Parallel Alignment and back-. Eb service for B. We are interested in systems biology of Alzheimer’s disease. Our recent publications in this area are listed below. 10 G-C. Han, J.-Y.Sun, J.-J.Wang, Z.-X.Bai, F.-H.Songand H.-X.Lei*.(2014) Genomics in neurological disorders.Genomics Proteomics and Bioinformatics12: 156-163. 6 J-J Wang, X.-M.Feng, Z.-X.Bai, L.-W.Jin, Y. Duan and H.-X.Lei*.(2014) Chromosome 19p in Alzheimer’s disease: when genome meet...5 G-C Han, J.-J.Wang, F. ...4 J-Y Sun...

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AlzBase

http://alz.big.ac.cn/alzBase/correlationIdrch.Job

Eb service for B. Parallel Alignment and back-. Eb service for B. Entrez ID * required. One id per line. Chinese Academy of Sciences. No1 Beichen West Road, Chaoyang District, Beijing 100101, China.

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AlzBase

http://alz.big.ac.cn/alzBase/summary/Gene

Eb service for B. Parallel Alignment and back-. Eb service for B. Top 109 gene in AlzBae vs. top genes from the genetic studies of AD. Neurological phenotype in mouse knockouts. There are 14145 genes recorded in AlzBase.The distribution of differential expressionfrequency is from 1 to 22. The gene count stands for the number of DEGs corresponding to the specific frequency. The accumulated count represents accumulated number of DEGs with frequency equal or greater than the specified number. No1 Beichen We...

alz.big.ac.cn alz.big.ac.cn

AlzBase

http://alz.big.ac.cn/alzBase/Document

Eb service for B. Parallel Alignment and back-. Eb service for B. Several layers of information have been integrated in AlzBase. Information regarding gene expressionincludes Alzheimer’s disease (AD), non-dementia, related diseases and aging. Information regarding correlation with disease severity includes cortical atrophy, Braak stage, MMSE and NFT scores. Other annotation information comes from Allen brain atlas, GWAS catalogue, eQTL studies and CTD drug database.Inaddition, gene-gene c...Publically av...

biodb.sgst.cn biodb.sgst.cn

SDSPB-组学数据资源

http://biodb.sgst.cn/main/cn/omicsDataResources.jsp

基因组勘测序列 Genome Survey Sequences,GSS 是基因组DNA克隆的一次性部分测序得到的序列。 序列标签位点 Sequence Tagged Sites 是基因组序列标记位点,其主要来源有随机位点序列、表达基因序列、遗产标记序列等。 随着测序技术的发展,新的测序仪器开始投入使用,其产生的数据也和以往不同,测出的单条序列较短,为此我们将其称为小片段序列集 Short Read Archive。 Http:/ lifecenter.sgst.cn/gb2/. Virtual Chinese Genome Database is a dynamic genome database of Chinese population.VCGDB is a big data solution based on public data released by 1000 Genomes Project. Http:/ lifecenter.sgst.cn/ipride/. Http:/ lifecenter.sgst.cn/para/. Query interface for microRNA - g...

gene-quantification.org gene-quantification.org

Gene Quantification & mRNA analysis methods & mRNAquantification

http://www.gene-quantification.org/mrna.html

Quantification of Gene Expression. Encyclopedia of DNA Element - Gene Expression Atlas - Brain Atlas - Human Proteome Maps . and more . The inclusion of transcriptome anaylsis dataset to the Human Protein Atlas database makes it even more comprehensive. Transcriptomics resources of human tissues and organs. MTD - The Mammalian Transcriptomic Database. Mass-spectrometry-based draft of the human proteome. A draft map of the human proteome. Tissue-based map of the human proteome. Looking closely at healthy ...

gene-quantification.eu gene-quantification.eu

Gene Quantification & mRNA analysis methods & mRNAquantification

http://www.gene-quantification.eu/mrna.html

Quantification of Gene Expression. Encyclopedia of DNA Element - Gene Expression Atlas - Brain Atlas - Human Proteome Maps . and more . The inclusion of transcriptome anaylsis dataset to the Human Protein Atlas database makes it even more comprehensive. Transcriptomics resources of human tissues and organs. MTD - The Mammalian Transcriptomic Database. Mass-spectrometry-based draft of the human proteome. A draft map of the human proteome. Tissue-based map of the human proteome. Looking closely at healthy ...

bigd.big.ac.cn bigd.big.ac.cn

Gene Expression Nebulas

http://bigd.big.ac.cn/gen

Gene Expression Nebulas (GEN) is a data portal of gene expression profiles under various conditions derived entirely from RNA-Seq data analysis in multiple species. Mammalian Transcriptomic Database (MTD) is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Rice Expression Database (RED) includes rice RNA-seq data exclusively, providing information on gene expression profiles of tissues under a wide range of treatments.

qpcrupdate.eu qpcrupdate.eu

Gene Quantification & mRNA analysis methods & mRNAquantification

http://www.qpcrupdate.eu/mrna.html

Quantification of Gene Expression. Encyclopedia of DNA Element - Gene Expression Atlas - Brain Atlas - Human Proteome Maps . and more . The inclusion of transcriptome anaylsis dataset to the Human Protein Atlas database makes it even more comprehensive. Transcriptomics resources of human tissues and organs. MTD - The Mammalian Transcriptomic Database. Mass-spectrometry-based draft of the human proteome. A draft map of the human proteome. Tissue-based map of the human proteome. Looking closely at healthy ...

qpcrupdate.net qpcrupdate.net

Gene Quantification & mRNA analysis methods & mRNAquantification

http://www.qpcrupdate.net/mrna.html

Quantification of Gene Expression. Encyclopedia of DNA Element - Gene Expression Atlas - Brain Atlas - Human Proteome Maps . and more . The inclusion of transcriptome anaylsis dataset to the Human Protein Atlas database makes it even more comprehensive. Transcriptomics resources of human tissues and organs. MTD - The Mammalian Transcriptomic Database. Mass-spectrometry-based draft of the human proteome. A draft map of the human proteome. Tissue-based map of the human proteome. Looking closely at healthy ...

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Mammalian Transcriptomic Database

We have collected 83, 27, 36 and 108 RNA-seq data for humans, pigs, rats, and mice in MTD. MTD version 1.0 is online now. Updated Nov 5, 2015. Elcome to MTD database. Please contact us for any questions or suggestions about our database. junyu@big.ac.cn. Or xiaojingfa@big.ac.cn. Beijing Institute of Genomics, Chinese Academy of Sciences.

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