mtdna-server.uibk.ac.at
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mtDNA-Server | mtdna-server.uibk.ac.at Reviews
https://mtdna-server.uibk.ac.at
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mtDNA-KnowledgeBase | Analyzing the human mitochondrial genome
http://haplogrep.uibk.ac.at/blog
HaploGrep2 Update 2.1.0. August 10, 2016. August 10, 2016. We just updated HaploGrep2, with the following minor points:. The Export of the Extended Report (Export / Haplogroup Extendet (txt) got extended with the “Found Polys” – see Describtion below:. The Report for the potential Phantom Mutations got corrected, so that positions with bases according the rCRS reference are not listed anymore. Report of the possible Recombinations based now on Hamming Distance instead of Kulczynksi-Distance. 8211; Varian...
Cloudgene, a Hadoop-As-A-Service approach – Sebs Blog
http://seppinho.github.io/cloudgene/hadoop/2015/08/27/cloudgene
Cloudgene, a Hadoop-As-A-Service approach. Already some years ago. My colleague Lukas Forer. Hadoop jar hadoop-examples.jar wordcount input output. To abstract this command we developed Cloudgene. Consisting of (a) a workflow system (including the workflow definition language WDL. Http:/ hadoop.apache.org/. Cloudgene simplified our lives a lot in the last years, and two very recent services based on Cloudgene show the success of our platform: The first service is the mtDNA-Server. Follow me on Twitter.
About Me – Sebs Blog
http://seppinho.github.io/about
A computational biologist based in the alps ( Innsbruck. Austria) and develop software for geneticists/biologists. Currently, my main software projects are Michigan Imputation Server. I’m a big fan of Hadoop, open-source software. And biorxiv. Check out my projects. On an regular basis. Theme crafted with 3 by John Otander.
NAR WebServer Issue Publication - mtDNA-Server – Sebs Blog
http://seppinho.github.io/mtdna/2016/04/18/nar-publication_2
NAR WebServer Issue Publication - mtDNA-Server. Providing Hadoop as a Service is the main goal of Cloudgene, as described in one of my previous blog entries. Since Cloudgene is only the platform, useful use cases need to be implemented and integrated in Cloudgene. Here I want to introduce our newest service called mtDNA-Server. Which have been published in the NAR WebServer Issue 2016. Have already been analysed. Upload data as FASTQ (SE/PE) or SAM/BAM. Parallel MapReduce alignment of your data. This pos...
HaploGrep2 - automatic mtDNA haplogroup classification using PhyloTree 17
http://haplogrep.uibk.ac.at/index.html
Automatic mtDNA haplogroup classification using PhyloTree 17. Click here to run HaploGrep2! MtDNA-Server- a free service for heteroplasmy and contamination detection in NGS data.
Projects – Sebs Blog
http://seppinho.github.io/projects
These are the main projects I’m currently working on:. A workflow system for Hadoop. Imputation Service based on minimac3. And Cloudgene. A cooperation with the Center of Statistical Genetics. MtDNA haplogroup classification using Phylotree. A cooperation with the Databases and Information Systems Group. At the University of Innsbruck. A NGS heteroplasmy and contamination pipeline based on Cloudgene. Including a parallelized version of BWA MEM. And in the German Chronic Kidney Disease Study GCKD.
NGS, HaploGrep and Hadoop MapReduce | mtDNA-KnowledgeBase
http://haplogrep.uibk.ac.at/blog/ngs-haplogrep-and-hadoop-mapreduce
NGS, HaploGrep and Hadoop MapReduce. NGS, HaploGrep and Hadoop MapReduce. December 16, 2014. December 17, 2014. Many of our HaploGrep users are interested in analysing data within automated pipelines. To support users with a scalable and standardized service, we are happy to present you our newest project, called mtDNA-Server. MtDNA-Server provides a free service for the complete workflow of NGS mtDNA projects. It includes the alignment of FASTQ SE/PE data based on BWA MEM (using JBWA. Sebastian has writ...
Software – Lukas Forer – Researcher and Software Developer
http://www.forer.it/projects
Researcher and Software Developer. Visit me on Github. Cloudgene is a freely available platform to improve the usability of MapReduce programs by providing a graphical user interface for the execution, the import and export of data and the reproducibility of workflows on in-house (private clouds) and rented clusters (public clouds). Http:/ cloudgene.uibk.ac.at. Https:/ imputationserver.sph.umich.edu. Http:/ mtdna-server.uibk.ac.at. Askimed is a software product to collect clinical study or register data ...
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mtDNA-Server
mtDNA Haplogroup C
Howdy welcome to all of you who have had their mtDNA tested and also belong to haplogroup C. Here we can exchange whatever information or research we come across about our haplogroup as well as related topics. Links to scholarly publications, newspaper articles and individuals' opinions are welcomed. We come together, some as 'genetic cousins' and others as more distant relatives. Gotham, Empire State, United States. View my complete profile. MtDNA C MAIL BOX. DROP YOUR E-MAIL HERE! Tuesday, July 26, 2005.
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