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Mulan :: MUltple sequence Local AligNment and visualization tool

Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Including the reference sequence). ALL FINISHED SEQUENCES : TBA. DRAFT SECONDARY SEQUENCES : refine. Multiple contigs per sequence) DNA sequences with a finished reference. To increase alignments sensitivity. Useful for diverged sequences). Return to previously submitted request.

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Mulan :: MUltple sequence Local AligNment and visualization tool | mulan.dcode.org Reviews
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Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Including the reference sequence). ALL FINISHED SEQUENCES : TBA. DRAFT SECONDARY SEQUENCES : refine. Multiple contigs per sequence) DNA sequences with a finished reference. To increase alignments sensitivity. Useful for diverged sequences). Return to previously submitted request.
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2 ecr browser
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5 zpicture
6 dire
7 synor
8 multitf
9 array2bio
10 eshadow
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Mulan :: MUltple sequence Local AligNment and visualization tool | mulan.dcode.org Reviews

https://mulan.dcode.org

Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Including the reference sequence). ALL FINISHED SEQUENCES : TBA. DRAFT SECONDARY SEQUENCES : refine. Multiple contigs per sequence) DNA sequences with a finished reference. To increase alignments sensitivity. Useful for diverged sequences). Return to previously submitted request.

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1

Abstract :: Mulan :: MUltple sequence Local AligNment and visualization tool

https://mulan.dcode.org/mulanDetails.php

MUltiple sequence Local AligNment and conservation visualization tool. Mulan performs full local alignment of multiple nucleotide sequences. It can be applied to the analysis of distant (such as humans and fish, for example) or closely related (such as humans and primates or mice and rats) species. Mulan performs both tba. Based alignments for finished-quality sequences and refine. Dynamic graphical visualization of conservation profiles with a number of options for data presentation. Mulan was developed...

2

Instructions :: Mulan :: MUltple sequence Local AligNment and visualization tool

https://mulan.dcode.org/mulanInstructions.php

MUltiple sequence Local AligNment and conservation visualization tool. Alignment of draft-quality sequences. Alignment of finished-quality sequences. Detection of transcription factor binding sites. Shared among multiple species. Multiple sequence textual alignments. Dynamic extraction of ECRs. Tools to align either draft or finished quality sequences. Mulan provides a dynamic graphical interface to align and visualize conservation profiles for evolutionarily distant and closely related species. It is po...

3

Mulan :: processing alignments

https://mulan.dcode.org/index.php?id=example

Status: In the queue. Automated update is done every 10 seconds.

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zPicture :: dynamic blastz alignment visualization

https://zpicture.dcode.org/multiz.php

Zpicture.dcode.org/multiz.php. Is a multi-sequence version of zPicture alignment and visualization tool. Please note that it is not possible to submit multi-zPicture alignments to rVista - use Mulan ( mulan.dcode.org. Pairwise sequence alignment tool. TOTAL NUMBER OF SEQUENCES. Including the reference sequence). Return to previously submitted request. Dcodeorg Comparativve Genomics Center.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/cite.php

Return to submitted job. If you find the results useful for your research, please cite DiRE as. Gotea, V. and I. Ovcharenko ( 2008. DiRE: identifying distant regulatory elements of co-expressed genes. Nucleic Acids Research. Doi:10.1093/nar/gkn300 [ Abstract. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/index.php?id=example

The requested ID is not valid. Please let us know ( dcode@ncbi.nlm.nih.gov.

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DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/return.php

Return to submitted job. Please enter a 16-digit request ID. To return to your previously submitted job:. NCBI DCODE.org Comparative Genomics Developments ( www.dcode.org.

dire.dcode.org dire.dcode.org

DiRE :: identification of DIstant Regulatory Elements of co-regulated genes

http://dire.dcode.org/details.php

Return to submitted job. Regulation of gene expression in eukaryotic genomes is established through a complex cooperative activity of proximal promoters and distant regulatory elements (REs) such as enhancers, repressors, and silencers. We developed a web server called DiRE. Lements, based on the Enhancer Identification (EI) method. Allows users to start their analysis with raw microarray expression data. Continue to: screen shots.

bx.psu.edu bx.psu.edu

CCGB | projects

http://bx.psu.edu/projects

Tasmanian Tiger Sequencing Project. Tools for manipulating biological data, particularly multiple sequence alignments. These are web browser based software tools that CCGB members have developed or contributed to. UCSC Genome Browser Mirror. Local partial mirror of the UCSC Genome Browser. Visualization tools for bacterial genome alignments. Evolutionary test of predicted exons. Genome alignment and annotation database. Metaserver for integrative analysis of genomic data. 124; Privacy and Legal Statements.

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Mulan :: MUltple sequence Local AligNment and visualization tool

Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Including the reference sequence). ALL FINISHED SEQUENCES : TBA. DRAFT SECONDARY SEQUENCES : refine. Multiple contigs per sequence) DNA sequences with a finished reference. To increase alignments sensitivity. Useful for diverged sequences). Return to previously submitted request.

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