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Next-Gen Sequencing Blog, NGS Data & Analysis — Making Sense of Next-Gen Sequencing Data | nextgenseek.com Reviews
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Next-Gen Sequencing Blog, Genomics, Next-Gen Sequencing Technology
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Interesting papers from the GTEx (Genotype-Tissue Expression) Project
http://nextgenseek.com/2015/05/three-papers-from-the-gtex-genotype-tissue-expression-project
Making Sense of Next-Gen Sequencing Data. You are here: Home. Interesting papers from the GTEx (Genotype-Tissue Expression) Project. Interesting papers from the GTEx (Genotype-Tissue Expression) Project. May 8, 2015. Middot; Leave a Comment. It has been a good week for RNA-seq enthusiasts. First, Kallisto. A new way to quantify transcript expression, happened at BOG15. And this weeks’ Science magazine has three interesting papers on the GTEx (Genotype-Tissue Expression) Project. The human transcriptome a...
Sailfish
http://nextgenseek.com/tag/sailfish
Making Sense of Next-Gen Sequencing Data. You are here: Home. Kallisto paper summary: Near-optimal RNA-seq quantification. May 31, 2015. Middot; 1 Comment. Middot; Tagged With: kallisto. Kallisto, a new ultra fast RNA-seq quantitation method. May 6, 2015. Middot; 2 Comments. Middot; Tagged With: kallisto. Transcript quantitation from RNA-seq. RNA-Skim: new RNA-seq quantitation method that is faster than Sailfish. June 19, 2014. Middot; 2 Comments. This is a quick post: summary/thoughts* on the new paper ...
Salmon
http://nextgenseek.com/category/rna-seq/salmon
Making Sense of Next-Gen Sequencing Data. You are here: Home. Paper Summary: Fast and accurate single-cell RNA-seq analysis using equivalence class counts. January 17, 2016. Middot; Leave a Comment. Filed Under: equivalent class counts. Middot; Tagged With: equivalent class counts for single-cell RNA-seq analysis. Kallisto paper summary: Near-optimal RNA-seq quantification. May 31, 2015. Middot; 1 Comment. Middot; Tagged With: kallisto. Follow me on Twitter. How Does NextSeq 500 Compare With MiSeq and Hi...
Seq Papers
http://nextgenseek.com/seq-papers
Making Sense of Next-Gen Sequencing Data. You are here: Home. One of the goals of this blog is to frequently write blog posts on interesting papers on sequencing, be it a new sequencing technology/assay or a new computational method to analyze sequencing data. Although have not really managed to do that to my satisfaction, here is an attempt to summarize what is done so far. Hope this will help increase more posts on interesting papers. Seq Papers in 2016. Seq Papers in 2015. Seq Papers in 2014. Sailfish...
kallisto paper summary: Near-optimal RNA-seq quantification
http://nextgenseek.com/2015/05/kallisto-paper-summary-near-optimal-rna-seq-quantification
Making Sense of Next-Gen Sequencing Data. You are here: Home. Kallisto paper summary: Near-optimal RNA-seq quantification. Kallisto paper summary: Near-optimal RNA-seq quantification. May 31, 2015. Middot; 1 Comment. In case you missed it, kallisto, the new RNA-seq quantification method. 8216;s group, was one of the biggest highlights from this year’s The Biology of the Genomes. Conference. kallisto team made the kallisto software. Immediately available and the preprint describing kallisto. Standard alig...
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The two-body opportunity | Bits of DNA
https://liorpachter.wordpress.com/2014/10/10/the-two-body-opportunity
Reviews and commentary on computational biology by Lior Pachter. October 10, 2014 in expository. This year half of the Nobel prize in Physiology or Medicine was awarded to May-Britt Moser and Edvard Moser, who happen to be both a personal and professional couple. Interestingly, they are not the first but rather the. And even if one presumes that it is, the term is an oxymoron because in physics the problem is solved whereas in academia it is used in a way that implies it is. Assigns to each string a valu...
Literature Review – Nikleotide!
http://nikleotide.com/category/literature-review-2
Daily complainings of a Computational Genomicist Post Doc! Evolution, Ecology and Behavior with Stephen C. Stearns. Some useful commands and tricks. The case of Cytosine de-amination. The results of the comparison between the two genomes of P.falciparum and P.vivax has revealed a very interesting phenomenon. All the Cytosines have been vanishing since the divergence of the two species at almost 150 MYA! More than what has been…. By Hamid Nikbakht (Behnam). June 27, 2012. Workshops Seminars and Conferences.
Topics in Cancer – Nikleotide!
http://nikleotide.com/category/cancer/topics-in-cancer
Daily complainings of a Computational Genomicist Post Doc! Evolution, Ecology and Behavior with Stephen C. Stearns. Some useful commands and tricks. Everything I Missed in Vim After 11 Years. Mike the Mad Biologist. The Elements of Bioinformatics. Useful One-Line Scripts for Perl. Theme by: Theme Horse.
Cancer Genomics – Nikleotide!
http://nikleotide.com/category/cancer/cancer-genomics
Daily complainings of a Computational Genomicist Post Doc! Evolution, Ecology and Behavior with Stephen C. Stearns. Some useful commands and tricks. Everything I Missed in Vim After 11 Years. Mike the Mad Biologist. The Elements of Bioinformatics. Useful One-Line Scripts for Perl. Theme by: Theme Horse.
Featured – Nikleotide!
http://nikleotide.com/category/featured
Daily complainings of a Computational Genomicist Post Doc! Evolution, Ecology and Behavior with Stephen C. Stearns. Some useful commands and tricks. Paediatric Glioblastoma, Tumor Evolution. So after all the ups and downs, I had to leave the beautiful small city of Guelph to pursue my future career back in Monteal. I got two positions, one from Princess Margaret in Toronto working on Cancer Epigenetics and…. By Hamid Nikbakht (Behnam). August 1, 2013. Finding an apartment in Guelph: Done! June 27, 2012.
Courses Archives - Bent Petersen
http://www.bpetersen.dk/blog/category/courses
My personal and professional adventure into Science. CV for Bent Petersen. My personal and professional adventure into Science. You are here: Home. Invitation to the 2nd Annual Danish Bioinformatics Conference, Aug 25-26, 2016. March 16, 2016. ELIXIR Denmark is sponsoring and organising the 2nd Annual Danish Bioinformatics Conference, to be held on August 25-26, 2016, in Odense, Denmark. The following speakers already confirmed their participation:. Anaïs Baudot, CNRS, France. Bruce Shapiro, NIH/NCI, USA.
NGS: News on Genomic Studies: May 2014
http://ngs-brescia.blogspot.com/2014_05_01_archive.html
NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Monday, 19 May 2014. Pubmed highlight: SNP detection tools comparison. Performance comparison of SNP detection tools with. Nucleic acids research. 2014 May 15. pii: gku392. Subscribe to: Posts (Atom).
NGS: News on Genomic Studies: March 2015
http://ngs-brescia.blogspot.com/2015_03_01_archive.html
NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Tuesday, 3 March 2015. Main new technologies from AGBT15. The new avalanche chemistry. New protocols for Ampliseq library preparation on Ion Chef system. News on the PII chip. Or on Omics Omics blog. Homolog...
NGS: News on Genomic Studies: September 2014
http://ngs-brescia.blogspot.com/2014_09_01_archive.html
NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Tuesday, 2 September 2014. PubMed Highlight: New relese of ENCODE and modENCODE. From: Nature (2014); Genomics: Hiding in plain sight. Other data sets derive from chromatin binding assays focused on transcri...
NGS: News on Genomic Studies: PubMed Highlight: Complete review of computational biology free courses
http://ngs-brescia.blogspot.com/2014/06/pubmed-highlight-complete-review-of.html
NGS: News on Genomic Studies. A blog with news and curiosity on genomics subjects with a particular interest for topics related to Next Generation Sequencing, Personal Genomics and Bioinformatics. We work at the University of Brescia (Italy) and are new in the field but with a lot of energy to share. Monday, 23 June 2014. PubMed Highlight: Complete review of computational biology free courses. Searls DB (2014) A New Online Computational Biology Curriculum. Subscribe to: Post Comments (Atom). The Tree of ...
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Call Next Gen Security now to arrange a free security survey Or click here. T: 0208 387 1278. Your Security is our business and we take your security very seriously. Next Gen Security Systems are NSI approved. Specialist security installers providing total security solutions and services for home and business properties. Contact us to see how we can help to protect you. Next Gen Security Systems Registered in England Number: 06373998 Burglar Alarm Package Deal. T: 0800 082 8686. Is there anything more im...
Next-Gen Sequencing Blog, NGS Data & Analysis — Making Sense of Next-Gen Sequencing Data
Making Sense of Next-Gen Sequencing Data. RECOMB 2018 Accepted Papers. January 11, 2018. The 22nd annual RECOMB 2018, one of the oldest conferences focusing on computational, mathematical, statistical and biological sciences has announced the list of accepted papers that will be presented as talks at the conference. This year’s RECOMB will be held in the picturesque Paris, France from 21st April through 24th April at Campus Pierre Et Marie Curie, Universite` […]. Filed Under: RECOMB 2018. January 11, 2018.
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