opm.phar.umich.edu

mosberglab.phar.umich.edu

Mosberg Lab - About Us

http://mosberglab.phar.umich.edu/aboutUs.php

About Us - Projects. Research in our lab focuses primarily on molecular recognition between small to medium size ligands (usually peptides) and their macromolecular targets (usually membrane-associated, G protein-coupled receptors, GPCRs) and spans structure-based drug design and synthesis, combinatorial synthesis, protein structure modeling, and biochemical characterization. 1 Development of mixed efficacy opioid ligands. 2 Design and synthesis of biologically active opioid peptides and peptidomimetics.

pdb.tau.ac.il

OCA© Targets

http://pdb.tau.ac.il/oca-docs/links.html

OCA dynamically creates links to the following resources. Contacts of Structural Units) Analysis of interatomic contacts in PDB entries. Families of Structurally Similar Proteins. Dipole moments of proteins. Collection of information about the genes, proteins, and intergenic regions of the E. coli K-12 genome and proteome. Database of the Drosophila Genome. Database of human genes, their products and their involvement in diseases. Information system for G protein-coupled receptors. IMB Jena Image Library.

multicomp.nibiohn.go.jp

MultiCoMP: Database of Multiple Conformations of Membrane Proteins

http://multicomp.nibiohn.go.jp/advanced.html

Database of Multiple Conformations of Membrane Proteins. 1 Search or Browse. 2 Select a reference protein. Eg, outer membrane protein ompg. 62; Browse TC Tree. Eg, 1B.21.1.1. 62; Browse OPM Tree. Eg, 12.08.01. Protein Cutoff X (%). Proteins having a percentage sequence identity (%) ≥ X with the reference protein are considered related and appear in the list on this page. Conformation Cutoff Y (Å). This project was funded by JST-BIRD.

jit.usc.edu

JCIMPT Links Page

http://jit.usc.edu/links.html

Membrane Protein Structure Databases. MPDB: Membrane Protein Data Bank. S White's Membrane Proteins of Known 3D Structure. H Michel's Membrane Proteins of Known Structure. PDBTM: Protein Data Bank of Transmembrane Proteins. OPM: Orientations of Proteins in Membranes Database. The G protein-Coupled Receptor Database. GLIDA: GPCR ligand database. GPCR Natural Variants database. GpDB: G proteins and their interactions with GPCRs. SEVENS: GPCR genes database. KEGG: Kyoto Encyclopedia of Genes and Genomes.

cell.mfour.med.kyoto-u.ac.jp

関連リンク | 分子細胞情報学（岩田研究室）

http://cell.mfour.med.kyoto-u.ac.jp/link.html

岩田研アラムナイ ネットワーク (50音順 敬称略，括弧内は現所属). 膜蛋白質構造基盤プロジェクト 科学技術振興機構 戦略的創造研究推進事業 新技術シーズ創出. 創薬等支援技術基盤プラットフォーム 文部科学省 研究開発施設等共用促進費補助金 創薬等ライフサイエンス研究支援基盤事業. Membrane Proteins of Known 3D Structure. Orientations of Proteins in Membranes (OPM) Database. Joint Center for Innovative Membrane Protein Technologies. Membrane Proteins Hub, PSI/nature Structural Biology Knowledgebase.

molbiol-tools.ca

Online Analysis Tools - Protein Secondary Structure

http://www.molbiol-tools.ca/Protein_secondary_structure.htm

Secondary structure prediction - is a HNN (Hidden Neural Network) secondary structure prediction program that uses the PSI-BLAST algorithm to produce a PSSM for the input sequence, which it then uses to perform its prediction. ( Reference:. K Lin et al. 2005. Bioinformatics 21:. Technical University of Berlin, Germany). 1D Protein Structure Prediction Server. For a metasite linked to a wide range of protein sequence analysis and structure predictions online programs, I recommend PredictProtein. Predictio...

canoz.com

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE

http://www.canoz.com/benchmark/benchmark.pl

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE. This benchmark server allows you to compare membrane helix prediction and topology prediction methods that have made their predictions based on amino acid sequence. If you want to compare methods :. 1 Choose the methods you want to compare and/or upload your own predictions. 2 Select the benchmark dataset (standard or personalized). 3 Specify the benchmark criteria. 1 Choose the methods you want to compare and/or upload your own predictions:. 2 Selec...

wahuha.com

Links

http://www.wahuha.com/vostr/links.htm

All links open in a new window. Past and current affiliations. Research page of Gianluigi Veglia's group. Research page of Roger Koeppe's group. MITHT department of Biotechnology (in Russian). Moscow State University, Biological faculty (in Russian). Institute of Bioorganic Chemistry, Experimental Biotechnological Plant. Orientations of proteins in membranes. Membrane proteins of known 3D structure (Stephen White). Membrane proteins of known structure determined by NMR (Dror Warschawski).