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pFind

pFind Studio: a computational solution for mass spectrometry-based proteomics. pFind是目前国内唯一的具有自主知识产权的蛋白质鉴定引擎。我们是中科院计算所pFind团队,开发了蛋白质鉴定引擎pFind,以及一系列质谱数据分析软件。我们最近在Nature Methods期刊上发表了文章,这是国内蛋白质组学第一篇。

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pFind Studio: a computational solution for mass spectrometry-based proteomics. pFind是目前国内唯一的具有自主知识产权的蛋白质鉴定引擎。我们是中科院计算所pFind团队,开发了蛋白质鉴定引擎pFind,以及一系列质谱数据分析软件。我们最近在Nature Methods期刊上发表了文章,这是国内蛋白质组学第一篇。
<META>
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1 pFind
2 蛋白质组学
3 蛋白质鉴定
4 定量蛋白质组学
5 质谱
6 翻译后修饰
7 蛋白质基因组学
8 mass spectrometry
9 proteomics
10 protein identification
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pFind | pcluster.org Reviews

https://pcluster.org

pFind Studio: a computational solution for mass spectrometry-based proteomics. pFind是目前国内唯一的具有自主知识产权的蛋白质鉴定引擎。我们是中科院计算所pFind团队,开发了蛋白质鉴定引擎pFind,以及一系列质谱数据分析软件。我们最近在Nature Methods期刊上发表了文章,这是国内蛋白质组学第一篇。

INTERNAL PAGES

pcluster.org pcluster.org
1

pParse

http://www.pcluster.org/software/pParse/index.html

PFind Studio: a computational solution for mass spectrometry-based proteomics. Is a software delicated to recalibrate the monoisotopic peaks of precursors in an MS/MS dataset. The basic assumption of pParse is that one tandem mass spectrum could come from more than one peptide. It could be a mixture of two or more peptides. Therefore, pParse checks the survy scan of an MS/MS spectrum ,reconstructs the eluting profile and exports the most possible precursors. Or pParse 2.0. Or pfind@ict.ac.cn. Proteomics,...

2

pCluster

http://www.pcluster.org/software/pCluster/index.html

PFind Studio: a computational solution for mass spectrometry-based proteomics. PCluster is a software tool for detecting protein modifications by tandem mass spectra clustering. It contains two algorithms, one of which clusters spectra using precursor information and the other uses fragment information in LC-MS/MS. The precursor-based algorithm named DeltAMT can detect abundant modifications in an extremely fast speed. PCluster was written in C and can be downloaded for non-commercial use:.

3

Benchmark

http://www.pcluster.org/benchmark.html

PFind Studio: a computational solution for mass spectrometry-based proteomics. Study Goal of iPRG 2013: Compare number of extra identification due to single nucleotide variants vs. novel sequences. Our results are marked by 'pFind'. [see the slides of ABRF.]. This year’s study focused on detecting modified peptides in a complex mixture, with beam-type CID from a Q-TOF type instrument. Our result is numbered ‘97053i’. [see the poster of ABRF.]. 1 iPRG 2010 study announcement. 3 iPRG 2010 poster.

4

pLabel

http://www.pcluster.org/software/pLabel/index.html

PFind Studio: a computational solution for mass spectrometry-based proteomics. Is a mass spectral peak labeling software developed for proteomics research. Main Functions:. 1 Supporting labeling a batch of spectra. Data and search result can be imported directly at the same time. 2 Supporting multiple formats of data type (dta, mgf, ms2) and results of multiple search engines (pFind, Mascot, SEQUEST). 3 Supporting ECD/ETD spectra labeling. 4 Supporting multiple AA sites, multiple types of modification.

5

Downloads

http://www.pcluster.org/downloads.html

PFind Studio: a computational solution for mass spectrometry-based proteomics. Please read carefully the pFind Studio Software License Agreement. Before downloading and using the software. Please fill in the registered table. And email it to pfind@ict.ac.cn. To get the registration key. For anyone who used pFind in the published paper, please cite:. PFind Studio version 2.8.6 for Windows. Feb 3rd, 2016 -. PFind Studio 2.8 including pFind. Is available now. Access Software. Important new features include:.

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pFind

Proteins are vital parts of living organisms, as they are the main components of the physiological metabolic pathways of cells. While proteomics generally refers to the large-scale experimental analysis of proteins, it is often specifically used for protein purification and mass spectrometry which is an analytical technique that measures the mass-to-charge ratio of charged particles. March 24, 2018. The pFind team climbed the Fragrant Hill and boarded the peak. February 7, 2018. January 26, 2018. The mis...

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pFind

Proteins are vital parts of living organisms, as they are the main components of the physiological metabolic pathways of cells. While proteomics generally refers to the large-scale experimental analysis of proteins, it is often specifically used for protein purification and mass spectrometry which is an analytical technique that measures the mass-to-charge ratio of charged particles. March 24, 2018. The pFind team climbed the Fragrant Hill and boarded the peak. February 7, 2018. January 26, 2018. The mis...

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Micromagnetics and Spintronics Group. Http:/ pcluster.tongji.edu.cn. Welcome to Professor Yaowen Liu (刘要稳)'s group. The Micromagnetics and Spintronics research group. Was established in October 2004, which is located at the Physics Department of Tongji University. What is the micromagnetics and spintronics? The word spintronics (shorten from spin electronics ) was coined by S. A. Wolf in 1996,.

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