holtlab.net
artemis | Holt Lab
https://holtlab.net/tag/artemis
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...
holtlab.net
act | Holt Lab
https://holtlab.net/tag/act
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...
holtlab.net
beginner’s guide | Holt Lab
https://holtlab.net/tag/beginners-guide
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...
holtlab.net
mauve | Holt Lab
https://holtlab.net/tag/mauve
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...
holtlab.net
mlst | Holt Lab
https://holtlab.net/tag/mlst
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...
holtlab.net
brig | Holt Lab
https://holtlab.net/tag/brig
Tools for bacterial comparative genomics. Yesterday I spoke at a workshop for JAMS TOAST (Sydney’s Joint Academic Microbiology Seminars – bioinformatics workshop)… I was asked to cover tools for comparative genomics, so I put together a list of the tried and tested programs that I find most useful for this kind of analysis. So here is the list. First, a few caveats…. These tools are useful for small-ish scale genomic comparisons, in the order of 2-20 genomes. De Bruijn graph assembly, incorporating multi...