phylowidget.org

PhyloWidget (BETA)

From Jordan and Piel,. Note: a URL pointing to your favorite Newick or Nexus file is also valid input for PhyloWidget Full. Open in PhyloWidget Full. Open in PhyloWidget Lite. PhyloWidget is a program for viewing, editing, and publishing phylogenetic trees online. It is small, contains a simple yet powerful user interface, and contains many novel features not available in other phylogenetic viewers ( see the screenshots. What is it used for? PhyloWidget is specifically designed for:. NB: the entire HTML ...

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PhyloWidget (BETA) | phylowidget.org Reviews

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From Jordan and Piel,. Note: a URL pointing to your favorite Newick or Nexus file is also valid input for PhyloWidget Full. Open in PhyloWidget Full. Open in PhyloWidget Lite. PhyloWidget is a program for viewing, editing, and publishing phylogenetic trees online. It is small, contains a simple yet powerful user interface, and contains many novel features not available in other phylogenetic viewers ( see the screenshots. What is it used for? PhyloWidget is specifically designed for:. NB: the entire HTML ...

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1 bioinformatics

2 phylowidget quickstart

3 information

4 what is phylowidget

5 visually exploring

6 editing trees

7 creating publication quality

8 tree figures

9 who wrote it

10 citations

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PhyloWidget (BETA) | phylowidget.org Reviews

https://phylowidget.org

From Jordan and Piel,. Note: a URL pointing to your favorite Newick or Nexus file is also valid input for PhyloWidget Full. Open in PhyloWidget Full. Open in PhyloWidget Lite. PhyloWidget is a program for viewing, editing, and publishing phylogenetic trees online. It is small, contains a simple yet powerful user interface, and contains many novel features not available in other phylogenetic viewers ( see the screenshots. What is it used for? PhyloWidget is specifically designed for:. NB: the entire HTML ...

INTERNAL PAGES

phylowidget.org

1

PhyloWidget Step-by-Step

http://www.phylowidget.org/vignettes/index.html

Is a series of instructional vignettes documenting the use of PhyloWidget, an open-source, web-based tree viewing program. If you are a biologist:. We recommend starting with the First Step. If you are a developer:. We recommend starting with the Last Step. Step 1: Tree Gallery. Of PhyloWidget configuations and visualizations. Try out different combinations of settings and parameters. Learn to use PhyloWidget for. Learn about the problem of displaying labels in trees. Create a tree from scratch.

2

PhyloWidget Step-by-Step

http://www.phylowidget.org/troubleshooting.html

All software has its flaws, and PhyloWidget is no exception. Below is a checklist of potential issues and our recommended solutions; please let us know about anything not covered here! Browser crash / freeze-up. With certain versions of Firefox, Java, and Windows XP or Vista, we have observed the browser crashing entirely when PhyloWidget. Or any other Java applet. Is run. If this is happening to you, please visit Java.com. And update your version of Java. Sluggish / strange behavior. Another option is t...

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alejandroordonezgloria.wordpress.com

Links | Alejandro Ordonez Gloria

https://alejandroordonezgloria.wordpress.com/links

Global Change (Paleo)Ecology and Plant Macroecology. Climate people and environment program (CPEP). Plant taxonomy / systematics. Taxonomic name resolution services. Useful software / data. Climatic data and geographical information. IPCC – Intergovernmental Panel on Climate Change. ISRIC – World Soil Information. Center for Climatic Research. Wisconsin Initiative on Climate Change Impacts (WICCI). Create a free website or blog at WordPress.com.

cyanolyase.genouest.org

Help

http://cyanolyase.genouest.org/help

CyanoLyase is a manually curated sequence database gathering members of the phycobilin lyase family and related sequences. Accessing the raw data. Adding informations to the database. 1 Browsing the database. All the sequences stored in this database can be accessed by several means. This section describes each of them. In CyanoLyase, each sequence is attached to a genome. The genomes. Includes a full listing of genomes where at least one phycobilin lyase or a related protein sequence has been identified.

gmod.org

GMOD Evo Hackathon - GMOD

http://gmod.org/wiki/GMOD_Evo_Hackathon

Tools for Evolutionary Biology Hackathon. November 8-12, 2010. Durham, North Carolina, USA. GMOD held a hackathon November 8-12, 2010, at the National Evolutionary Synthesis Center (NESCent). In Durham, North Carolina. This hackathon focused on improving GMOD's support for evolutionary biology. The Open Call for Participation. Went out on August 1, 2010, and remained open until August 25. Participants have been selected and notified of their status. Viewing tools for comparative genomics data. This hacka...

adventuresofmaddy.blogspot.com

Adventures of Maddy: January 2009

http://adventuresofmaddy.blogspot.com/2009_01_01_archive.html

The weekly progress log for my DMD Senior Project. Friday, January 30, 2009. I just finished meeting with Val again to continue finalizing my design doc and make a list of what I need to be focusing on next. What's left for the design doc is the background reading I still need to do about the Tree of Life. Project itself, both for the prior work section and the abstract. . Download PhyloWidget standalone application, install it, and get used to how it works. Meet with Val, Thursday the 5th. For now, here...

adventuresofmaddy.blogspot.com

Adventures of Maddy: February 2009

http://adventuresofmaddy.blogspot.com/2009_02_01_archive.html

The weekly progress log for my DMD Senior Project. Tuesday, February 24, 2009. For my own reference: . Http:/ subclipse.tigris.org/servlets/ProjectProcess? Is the official Subclipse site. . Http:/ www.ibm.com/developerworks/opensource/library/os-ecl-subversion/. Is the site that was most helpful in describing how Subversion and Subclipse work. Http:/ code.google.com/p/phylowidget/source/checkout. Is the GoogleCode website where the most recent code is available. Monday, February 23, 2009. Deals with NHX ...

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phyloviz.net

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Mac OSX software for sequence analysis. Note: The NCBI client provided by versions of XplorSeq earlier than 1.0.7 is deprecated. Please download a new release of XplorSeq. Toolkit of sequence analysis software. Includes C and C libraries and source code for the following programs: barcrawl, bartab, biodiv, sortx.

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PhyloWidget (BETA)

From Jordan and Piel,. Note: a URL pointing to your favorite Newick or Nexus file is also valid input for PhyloWidget Full. Open in PhyloWidget Full. Open in PhyloWidget Lite. PhyloWidget is a program for viewing, editing, and publishing phylogenetic trees online. It is small, contains a simple yet powerful user interface, and contains many novel features not available in other phylogenetic viewers ( see the screenshots. What is it used for? PhyloWidget is specifically designed for:. NB: the entire HTML ...

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