The PRABI is the Rhone-Alpes Bioinformatics Center. This site presents the databases and computational tools developed by and available through the PRABI for biology and health research.
http://www.prabi.fr/
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PRABI : Pôle Rhône-Alpes de Bioinformatique / Rhone-Alpes Bioinformatics Center | prabi.fr Reviews
https://prabi.fr
The PRABI is the Rhone-Alpes Bioinformatics Center. This site presents the databases and computational tools developed by and available through the PRABI for biology and health research.
ProDom home page
ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database. Access to 2012.1/CG1803. December 2nd, 2015). Generate and visualize sequence families using your own data. Dig the data into the ProDom files. The AC numbering scheme was modified: AC numbers are now built as follows:. The following pattern is then repeated three times:. 1 letter or number (. Is a valid Prodom AC, and. Is a valid ProDom-CG AC. ProDom - Server maintained by Dominique Guyot.
PRIAM
ENZYME-SPECIFIC PROFILES for metabolic pathway prediction. PRIAM: PRofils pour l'Identification Automatique du Métabolisme. Clotilde CLAUDEL-RENARD, Claude CHEVALET, Thomas FARAUT, Daniel KAHN. Clotilde Claudel-Renard, Claude Chevalet, Thomas Faraut and Daniel Kahn / Enzyme-specific profiles for genome annotation: PRIAM Nucleic Acids Research, 2003, Vol. 31, No. 22 6633-6639. As an example, PRIAM was applied to predict metabolic pathways from the complete genome of the nitrogen fixing bacterium Sinorhizo...
Welcome to Prabig — Prabig Portal
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KisSplice • Home
A local transcriptome assembler for SNPs, indels and AS events. 2016-12-01: kissDE version 1.4.0. 2016-07-31: Our NAR paper. Is out. Full protocol to reproduce the results is available here. 2016-04-14: KisSplice version 2.4.0-p1. 2016-01-08: KisSplice version 2.4.0. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not reconstruct them entirely. Which type of data do I have? Which post-treatment can I use? The text of this pag...
PRABI-Doua: Homepage
Pôle Rhône-Alpes de Bioinformatique Site Doua. Is one of the six sites that are members of the PRABI. Bioinformatics regional center. Its aim is to promote research and software development in bioinformatics. Performed in the teams involved in this activity in the Doua campus area:. The Bioinformatics and Evolutionary Genomics. The Evolutionary Ecology and Population Processes. Last modification on Jan 2014.
prabi.fr
PRABI : Pôle Rhône-Alpes de Bioinformatique / Rhone-Alpes Bioinformatics Center
http://www.prabi.fr/spip.php?page=sommaire
Labs and Research Groups. Is the Rhône-Alpes Bioinformatics Center, a IBiSA. Regional center member of the ReNaBi. French Network of Bioinformatic platforms). It gathers 12 research teams and/or platforms spread on six different sites. The PRABI has research, service and training activities in a large number of bioinformatics and biostatistics fields. Get the PRABI presentation in pdf here.
PRABI : Pôle Rhône-Alpes de Bioinformatique / Rhone-Alpes Bioinformatics Center
http://www.prabi.fr/spip.php?page=labs
Labs and Research Groups. PRABI: LABORATORIES AND RESEARCH GROUPS. Structural NMR and Bioinformatics Team. Bacterial population dynamics research team. Bioinformatics and evolutionary genomics research team. Ibis : Modeling, simulation, measurement, and control of bacterial regulatory networks. INCa-Synergie Bioinformatics Facility for Cancer Genomics. Laboratoire de Biologie à Grande Echelle. EDyP : Exploring the Dynamics of Proteomes.
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- DTAMB
http://dtamb.univ-lyon1.fr/spip/spip.php?rubrique1
Modalités d’accès. Plan d’accès. Règlement intérieur. Appareils d’électrophorèse en capillaire. Equipement pour puces à ADN. Spectrophotomètres et spectrofluorimètre. 3100-Avant Genetic Analyser" Applied Biosystems - HITACHI. GeneTACTM LS IV" PERKIN ELMER. Spectrofluorimètre "Xenius" safas. Spectrophotomètre "ND-1000" NanoDrop. Spectrophotomètre "UVmc2" safas. 1 DTAMB - BIOFIDAL. Bilans d’utilisation des appareils. Créez votre compte. Modalités des réservations et des prestations. Ce site a été réalisé p...
PRABI-AMSB - Bioinformatique et Biostatistiques - Fédération Bio Environnement Santé
http://bioenvis.universite-lyon.fr/PRABI-AMSB.html
Biostatistique, Biomathématique, Bioinformatique. Ecologie évolutive et fonctionnelle. Génomique et épigénomique, évolutives et fonctionnelles. Serre et Chambres climatiques. Analyse des ressources microbiennes. Chimie des milieux naturels. Culture et expérimentation végétale. Expérimentation sur organismes vivants. Unités de Recherche et équipes associées. Appui et services à la formation. Rechercher dans le site. PRABI-AMSB - Bioinformatique et Biostatistiques. Mercredi 16 septembre 2015. 04 72 44 62 96.
PRABI-Doua: CAP3 Sequence Assembly Program
http://doua.prabi.fr/software/cap3
Pôle Rhône-Alpes de Bioinformatique Site Doua. CAP3 Sequence Assembly Program. Enter your sequences in FASTA. Format (no more than 50 kb):. This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3. If you use CAP3 in any published work, please cite the following reference:. Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res. For a more advanced usage of CAP3, it is recommended to install the original software on your local computers.
ProDom home page
http://prodomweb.univ-lyon1.fr/prodom.html
ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database. Access to 2012.1/CG1803. December 2nd, 2015). Generate and visualize sequence families using your own data. Dig the data into the ProDom files. The AC numbering scheme was modified: AC numbers are now built as follows:. The following pattern is then repeated three times:. 1 letter or number (. Is a valid Prodom AC, and. Is a valid ProDom-CG AC. ProDom - Server maintained by Dominique Guyot.
ReNaBi » ReNaBi – IFB
http://www.renabi.fr/news/renabi-ifb
ReNaBi – IFB. Posted on décembre 2, 2014 by admin. ReNaBi a cessé ses activités qui sont reprises par l’ IFB. Institut Français de Bioinformatique). BIPS : Plate-forme bio-informatique de Strasbourg. CBIB : Centre de Bioinformatique de Bordeaux. Centre National de Séquençage. IGS : Laboratoire Information Génomique et Structurale. IMGT , the international ImMunoGeneTics information system. Plateforme bio-informatique de Genotoul. PRABI : Rhone-Alpes Bioinformatics Center. Content ReNaBi 2009 - webmaster.
ReNaBi » Transcriptomics
http://www.renabi.fr/category/transcriptomics
Archive for the Transcriptomics. Posted on décembre 6, 2009 by admin. Transcriptomic tools provided by ReNaBi platforms. A software for DNA copy number analysis in CGH arrays. A software for CGH array normalisation. An interface for visualisation of molecular profiles and their analysis. A web tool for managing array CGH projects and analysing data. A software for two-color microarray image analysis. A software for DNA copy number analysis in Affymetrix SNP arrays. ENS transcriptome platform (Paris).
PRABI-Doua: Software and Packages
http://doua.prabi.fr/templates/software
Pôle Rhône-Alpes de Bioinformatique Site Doua. Sequence database management system. R library for multivariate analysis and graphical display. C libraries for bioinformatics. Branch-nonhomogeneous and nonstationary model of protein evolution implemented under Bio . Identification of promoter regions associated with CpG islands in large genomic mammalian sequences. Adjacencies between ancestral genes from. Pairwise local alignments visualization. Java framework for genome rearrangements analysis.
PRABI-Doua: Online Services
http://doua.prabi.fr/templates/services
Pôle Rhône-Alpes de Bioinformatique Site Doua. Database access with ACNUC. General form to perform complex queries using various criteria. Search using accession, numbers, sequence identifiers or keywords. Search families by crossing taxa. Perform search using taxonomic criteria. Search using cross-references between different databases. Send your own lists of sequences names or accession numbers in order to retrieve them. Browse the taxonomy of the organisms represented in the databases.
KisSplice • Download
http://kissplice.prabi.fr/download
A local transcriptome assembler for SNPs, indels and AS events. Downloading KisSplice imposes the full acceptance of the CeCILL. KisSplice is written in C and Python. It works on Linux and Mac 64b systems. It also requires Python 2.7.x. Version 2.4.0-p1. Kissplice Version 2.4.0-p1. Fixed a bug that happened if the user uses the - min overlap parameter. Version 2.4.0. Kissplice Version 2.4.0. Added a timestamp to the main messages of the pipeline and a summary log file in the results folder. Added - keep-...
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PRABI : Pôle Rhône-Alpes de Bioinformatique / Rhone-Alpes Bioinformatics Center
Labs and Research Groups. Is the Rhône-Alpes Bioinformatics Center, a IBiSA. Regional center member of the ReNaBi. French Network of Bioinformatic platforms). It gathers 12 research teams and/or platforms spread on six different sites. The PRABI has research, service and training activities in a large number of bioinformatics and biostatistics fields. Get the PRABI presentation in pdf here.
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