costalab.org
Publications | IZKF Computational Biology and Bioinformatics Research Group
http://costalab.org/publications-2
Darr; Skip to Main Content. Sere K., Freitas, J. Zenke, M., Costa, I.G. 2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research. Epub gkw680 [ paper. Zenke, M., Costa, I.G. 2016), Analysis of computational footprinting methods for DNase sequencing experiments, Nature Methods. 13, 303 309 [ paper. Nascimento, A. C. Prudencio, R.B.C, Costa I.G. A Multiple Kernel Learning algorithm for drug-target interaction prediction, BMC. 51(2):267-270. [ paper. Deary I....
costalab.org
Software | IZKF Computational Biology and Bioinformatics Research Group
http://costalab.org/software
Darr; Skip to Main Content. Is a toolbox for the integrative analysis of regulatory and expression data from ChIP-Seq, RNA-Seq and biological sequences. The tool provides several functionalities required for regulatory analysis as Chip-Seq peak calling, transcription factor binding site detection and association to further experimental data as gene expression. Provides multiple motif analysis common operations such as motif matching and motif enrichment. All analyses allow experimental flexibility an...
