homemicrobiome.com
Microbial Biodiversity of Cell Phones and Shoes « Home Microbiome Study
http://homemicrobiome.com/microbial-biodiversity-of-cell-phones-and-shoes
Raquo; Microbial Biodiversity of Cell Phones and Shoes. Microbial Biodiversity of Cell Phones and Shoes. Published February 24, 2012 at 4:05 am. The results are in! So, what lives on reporters’ cell phones and shoes, you ask? As, you can see from the graph at left, quite a lot! Each vertical bar is one shoe or cell phone, and each color represents a different species of bacteria. The larger the colored block, the more prevalent the species. The most predominant species include:. You can click here. Note:...
pycogent.org
Scripting guidelines — PyCogent 1.9 documentation
http://pycogent.org/scripting_guidelines.html
PyCogent 1.9 documentation. Developing command line interfaces for your scripts is a convenient way to create easily reproducible analyses with PyCogent. This document covers the support for developing standardized interfaces in PyCogent. In addition to making your code easier to distribute (or to return to months after it was originally written), several GUI generators that are currently in development make use of the PyCogent. Module – this means that defining your interfaces with PyCogent’s. For PyCog...
wernerlab.org
Software Resources - Werner Lab
http://www.wernerlab.org/software
Check out the MacQIIME page. For more information on an easy way to install and use QIIME on your Mac OS X computer. QIIME is a python-based software pipeline for analyzing high-throughput sequencing data (It goes all the way from raw SFF files to final figures! It can be difficult to install, unless you are very familiar with Unix and compiling code. To make things simpler for myself and collaborators, I put together this pre-compiled package. Some great open software that students should try out. Recom...
bioinfo.lifl.fr
SortMeRNA
http://bioinfo.lifl.fr/RNA/sortmerna
Fast filtering, mapping and OTU picking. SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS reads in metatranscriptomic and metagenomic data. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering ribosomal RNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9 ( http:/ qiime.org. 2 February 2016),.
cdwscience.blogspot.com
Genomics, ETC.: October 2013
http://cdwscience.blogspot.com/2013_10_01_archive.html
A blog about genetics, genomics, and medical research. Monday, October 21, 2013. Analyze Your 16S rRNA Data Using MG-RAST. Register for an Account. You can use this link to register: http:/ metagenomics.anl.gov/? Automated, so registration is not immediate. It took about a day. To create an account for me. Once you receive an e-mail saying "MG-RAST - account request approved", you can sign-in for the next step. Go to the MG-RAST website: http:/ metagenomics.anl.gov/. I would recommend using Firefox.
elixirfbp.org
Elixir Flow-Based Programming: GenStage and Bioinformatics
http://www.elixirfbp.org/2016/11/genstage-and-bioinformatics.html
Tuesday, November 15, 2016. In this post, I will describe my first attempt at using GenStage. In partiuclar, its Flow. Module - to implement a bioinformatics algorithm. My day job for the last couple of years has been the building of a full-stack system for the storage and searching of the metagenomic analyses ( metagenomics. One of the reasons I started this blog was because metagenomics is typically performed by sending what is called the raw read of nucleotide. The algorithm needs to slide along the s...
elixirfbp.org
Elixir Flow-Based Programming: November 2016
http://www.elixirfbp.org/2016_11_01_archive.html
Tuesday, November 15, 2016. In this post, I will describe my first attempt at using GenStage. In partiuclar, its Flow. Module - to implement a bioinformatics algorithm. My day job for the last couple of years has been the building of a full-stack system for the storage and searching of the metagenomic analyses ( metagenomics. One of the reasons I started this blog was because metagenomics is typically performed by sending what is called the raw read of nucleotide. The algorithm needs to slide along the s...
