rnaspace.org

RNAspace

RNAspace is a platform which aims at providing an integrated environment for non-coding RNA annotation. The increasing number of ncRNA discovered since 2000 and the lack of user friendly tools for finding and annotating them, have made necessary to propose to biologists an in silico. Environment allowing structural and functional annotations of these molecules with regard to available protein genes annotation environments. RNAspace makes available a variety of ncRNA gene finders.

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RNAspace | rnaspace.org Reviews

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RNAspace is a platform which aims at providing an integrated environment for non-coding RNA annotation. The increasing number of ncRNA discovered since 2000 and the lack of user friendly tools for finding and annotating them, have made necessary to propose to biologists an in silico. Environment allowing structural and functional annotations of these molecules with regard to available protein genes annotation environments. RNAspace makes available a variety of ncRNA gene finders.

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5 and ncrna databases

6 partners

7 availability

8 news

9 coupons

10 reviews

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RNAspace | rnaspace.org Reviews

https://rnaspace.org

RNAspace is a platform which aims at providing an integrated environment for non-coding RNA annotation. The increasing number of ncRNA discovered since 2000 and the lack of user friendly tools for finding and annotating them, have made necessary to propose to biologists an in silico. Environment allowing structural and functional annotations of these molecules with regard to available protein genes annotation environments. RNAspace makes available a variety of ncRNA gene finders.

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rnaspace.org

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RNAspace

http://www.rnaspace.org/manage

Enter the genomic sequences in Fasta or multiFasta format (the number of sequences is limited to 20 per multiFasta). For each sequence, you can describe the name, the domain the species, the strain and the replicon. [? There is a global size limitation of 5.0 Mb. Length between 1 and 40." mask="sequence name" value="seq 000001" /. Length between 1 and 20." value="unknown" /. Length between 1 and 20." value="unknown" /. Length between 1 and 20." value="unknown" /. Or paste it here:.

2

RNAspace - Help

http://www.rnaspace.org/help

RNAspace is a web platform to support non-protein-coding RNA (ncRNA) identification on genomic sequences. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats ( FASTA. The environment is developed as a collaboration between several French bioinformatics platforms and laboratories. It is an Open Source software available through:.

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RNAspace

http://www.rnaspace.org/partners

RNAspace has been funded in 2007 by the RNG and in 2010 by ReNaBI (french National Network of Genomic Centers). BONSAI team, LIFL - UMR CNRS 8022 - Univ. Lille 1 and INRIA Lille Nord Europe. Antoine de Monte (2008-2010). Hélène Touzet. Unité de Biométrie et Intelligence Artificielle, INRA Toulouse. J-Marc Larré (2008). Jérôme Mariette. IGM, UMR 8621 CNRS - Univ. Paris Sud. Comments and remarks: contact@rnaspace.org.

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bioinfo.lifl.fr

YASS : genomic similarity search tool

http://bioinfo.lifl.fr/yass

YASS : genomic similarity search tool. Retrieve result with an ID. YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format ( it produces local pairwise alignments. Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST .), YASS uses seeds. Main features of YASS are:. Multiple, possibly overlapping seeds and a new hit criterion to ensure a good sensitivity/selectivity trade-off. YASS produ...

renabi.fr

ReNaBi » ReNaBi-Sud-Ouest

http://www.renabi.fr/platforms/renabi-sud-ouest

Posted on février 2, 2010 by Christine Gaspin. The Sud-Ouest platform is a federation of different sites from Bordeaux and Toulouse:. Services provided to the community. GenoToul proposes training sessions attended by a broad range of biologists and bioinformaticians ranging from beginners to more accustomed users. See. Available skill covers sequence analysis from sequence assembling to genome and EST annotation and variability analysis. BIPS : Plate-forme bio-informatique de Strasbourg.

lifl.fr

start [Bonsai]

http://www.lifl.fr/bonsai

Some of our projects. We are a bioinformatics research group affiliated with INRIA Lille - Nord Europe. And the Centre de Recherche en Informatique, Signal et Automatique de Lille. CRIStAL, Université Lille 1. See our software server. Our Inria activity report. And the list of publications. 2 PhD grants are available. On the subject on algorithms for high-throughput sequencing data (deadline: April 15). October 28-30: Bioinformatics tools for NRPS discovery, From genomic data to the products. Classificat...

renabi.fr

ReNaBi » Genomics

http://www.renabi.fr/category/sequence-analysis

Archive for the Genomics. Posted on décembre 6, 2009 by admin. DNA & Protein motifs. A software for detecting transcription factor binding sites from NGS ChIPseq data. A software for detecting structural rearrangements from NGS mate-pair genomic sequencing data. Storage and basic analysis of data produced by the 454 sequencer of the Sequencing and Genotyping platform. Software package containing methods for the follow-up of the assembly phases and for initiating annotation during the ﬁnishing stage.

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RNAspace

RNAspace is a platform which aims at providing an integrated environment for non-coding RNA annotation. The increasing number of ncRNA discovered since 2000 and the lack of user friendly tools for finding and annotating them, have made necessary to propose to biologists an in silico. Environment allowing structural and functional annotations of these molecules with regard to available protein genes annotation environments. RNAspace makes available a variety of ncRNA gene finders.

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