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SBEAMS Project HomeIn order to support the data being generated by local microarray, proteomics, immunohistochemistry, and other experiments, we are developing and using SBEAMS.
http://www.sbeams.org/
In order to support the data being generated by local microarray, proteomics, immunohistochemistry, and other experiments, we are developing and using SBEAMS.
http://www.sbeams.org/
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SBEAMS Project Home | sbeams.org Reviews
https://sbeams.org
In order to support the data being generated by local microarray, proteomics, immunohistochemistry, and other experiments, we are developing and using SBEAMS.
sbeams.org
SBEAMS - Microarray Description
http://www.sbeams.org/Microarray
Web interface package webbioc. To provide normalization and analysis functionality. Output from the analysis pipeline is loaded into the database from which researchers may perform analysis queries or export to other analysis packages. We have set up a public instance of SBEAMS here at sbeams.org. This has both the Microarray and Proteomics modules enabled. You may log in with a demo account. And explore. (Demo accounts are any of demo01,demo02, . through demo10 using password 'sbeamsdemo'.).
SBEAMS Project Home
http://www.sbeams.org/index.php
In order to support the data being generated by local microarray, proteomics, immunohistochemistry, and other experiments, we are developing and using SBEAMS.
SBEAMS - Test Drive and Login access
http://www.sbeams.org/trysbeams.php
We have set up a public instance of SBEAMS here at sbeams.org. This has both the Microarray and Proteomics modules enabled. You may log in with a demo account and explore. (Demo accounts are any of demo01,demo02, . through demo10 using password 'sbeamsdemo'.). Log in with a demo account. Please use this link. If you already have a login and password at sbeams.org. You may also want to follow along with one or both of the following tutorials, which exercise many of the features of the respective modules:.
SBEAMS Project Description
http://www.sbeams.org/project_description.php
In order to better support the data being generated by local microarray, proteomics, macroarray, and other experiments, we are developing and using SBEAMS. The SBEAMS-Microarray module will be compliant with the emerging MAGE-OM/ML (MicroArray Gene Expression - Object Model/Markup Language) specification ( http:/ sourceforge.net/projects/mged/. And MAGE-ML for data exchange and storage formats, which will allow interoperability with other software like GeneX ( http:/ genex.ncgr.org/. Below that to the ri...
SBEAMS: Download Sample Data
http://www.sbeams.org/sample_data
Below are some links to download test data sets that will be useful for setting up SBEAMS at external sites. External test data.tar.gz. Group of 9 Affy Cel files, plus an annotation file. Affy test data.tar.gz. Group of 4 Affy Cel Files from HG-133 Plus 2, Plus Annotation File. Peroxisomes in Yeast experiment files. Yeast orfs.new.20040422.gz. Database that the above two experiments were searched against. Required for loading experiment data into SBEAMS. Approx 1.9 MB.
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peptide Atlas
http://www.peptideatlas.org/software.php
Farrah, et al.). Several software programs are used in the making of PeptideAtlas. The main packages follow:. LC-MS/MS spectra identification: SEQUEST. Thermo Finnigan), X! The GPM), SpectraST. ISB), and others. Identification correctness scoring (ISB): Trans-Proteomic Pipeline. Including PeptideProphet, InterProphet, and ProteinProphet. Database loading and query (ISB): SBEAMS. Genome Annotation (EMBL-EBI and Sanger Institute): Ensembl. Peptide mapping to Ensembl (NCBI): BioEnsembl.
SCGAP UESC Software Information
http://scgap.systemsbiology.net/software
SCGAP UESC Software Information. Luminal and basal cells. Software available exclusively here. Software or scripts exclusively associated with this project will be posted here. SCGAP GeneExpression via SOAP Test Software. Original test code (obsolete). Second version test code - 2003-11-10 ( scgap-soap-0.02.tgz - 2.5 KB gzipped tar file. Links to Software Available Elsewhere. Links to some interesting software that is hosted elsewhere are posted here. ISB Microarray Processing Software.
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Quick-learning problem solver and data cruncher interested in creative information solutions. September 2010 – present. University of Washington; Seattle, WA. Masters of Library and Information Science. Graduate and Professional Student Senate Representative for the iSchool MLIS program. GPA of 3.8, expected graduation 2013. September 1998 – June 2002. University of Washington; Seattle, WA. Bachelors of Science in Cell and Molecular Biology; Chemistry. Dean’s List Spring 2000 and Winter 2000. Lead develo...
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Homepage of Peter Boné a.k.a sBeam
Use of undefined constant SCRIPT NAME - assumed 'SCRIPT NAME' in /home/sbeam dk/www/sbeamdk/header.php. Undefined variable: admin in /home/sbeam dk/www/sbeamdk/header.php. Personal homepage of Peter Boné a.k.a. sBeam. My various hard- and software projects. Music that i made throughout the years. So, who am i? Sbeamdk by Peter Boné -.
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SBEAMS Project Home
In order to support the data being generated by local microarray, proteomics, immunohistochemistry, and other experiments, we are developing and using SBEAMS.
www.sbean.com
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