scampi.bioinfo.se
SCAMPI2TOPCONS
http://scampi.bioinfo.se/
TOPCONS
http://scampi.bioinfo.se/
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SCAMPI2 | scampi.bioinfo.se Reviews
https://scampi.bioinfo.se
TOPCONS
scampi.bioinfo.se
SCAMPI2
http://scampi.bioinfo.se/pred/news
169; Arne Elofsson. Published 2015-10-30 12:26:34 CEST). Now you are able to submit queries to run also SCMAPI-msa. However, due to the limitation of our computational resource, you are able to submit at most 3 sequences at a time.
SCAMPI2
http://scampi.bioinfo.se/pred/failed
169; Arne Elofsson. You don't have any failed jobs within the past 30 days.
SCAMPI2
http://scampi.bioinfo.se/pred/serverstatus
169; Arne Elofsson. Total number of sequences in the queue:. Total number of finished sequences since 2015-07-13:.
SCAMPI2
http://scampi.bioinfo.se/pred/finished
169; Arne Elofsson. You don't have any finished jobs within the past 30 days.
SCAMPI2
http://scampi.bioinfo.se/pred/reference
169; Arne Elofsson. Please cite this paper if you find SCAMPI2 useful in your research. Improved topology predictions using the first and last hydrophobic helix rule. Christoph Peters, Konstantinos D. Tsirigos, Nanjiang Shu, Arne Elofsson. Bioinformatics. 2015 Dec 7. pii: btv709. [Epub ahead of print] [ PubMed.
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http://bioinfo.se/software
Protein evolution. Protein structure predictions. Bioinformatics. Our ambition is to develop better methods for prediction of protein structure and function. The most successful methods are provided as web-based servers. Web-services developed through EMBRACE. A program for homology modelling. A program for Hidden Markov Model-based homology scoring. Ultra rapid, accurate model quality assessment for protein structure prediction. A predictor of protein quality. Membrane Protein Topology Prediction Methods.
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SCAMPI2
169; Arne Elofsson. Please paste your amino acid sequences in FASTA. Format (max 100000 chars). Allowed characters: "ABCDEFGHIJKLMNOPQRSTUVWXYZ*", of which "BUZJO*" will be converted to 'X'. Sequences should be no shorter than 10 amino acids. Maximal number of input sequences for SCAMPI-single: 100000. Maximal number of input sequences for SCAMPI-msa: 3. Alternatively, upload a text file in FASTA format upto 100 MB:. Email (recommended for batch submissions):. Force run (do not use cached results):.
SCAMPI: Prediction of membrane protein topology
Thursday, August 13 2015. Prediction of membrane protein topology from first principles. SCAMPI allows for requests of up to 100,000 protein sequences, and is appropriate for large benchmark sets and full proteome scans. If you have only one or a few sequences, use the TOPCONS server. For better predictive performance. SCAMPI can typically process around 20,000 protein sequences per minute, but may take longer, depending on server load. Enter up to 1,000 protein sequences in FASTA.
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