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SCAMPI: Prediction of membrane protein topologySCAMPI
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SCAMPI
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SCAMPI: Prediction of membrane protein topology | scampi.cbr.su.se Reviews
https://scampi.cbr.su.se
SCAMPI
BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE
http://www.canoz.com/benchmark/benchmark.pl
BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE. This benchmark server allows you to compare membrane helix prediction and topology prediction methods that have made their predictions based on amino acid sequence. If you want to compare methods :. 1 Choose the methods you want to compare and/or upload your own predictions. 2 Select the benchmark dataset (standard or personalized). 3 Specify the benchmark criteria. 1 Choose the methods you want to compare and/or upload your own predictions:. 2 Selec...
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SCAMPI2
169; Arne Elofsson. Please paste your amino acid sequences in FASTA. Format (max 100000 chars). Allowed characters: "ABCDEFGHIJKLMNOPQRSTUVWXYZ*", of which "BUZJO*" will be converted to 'X'. Sequences should be no shorter than 10 amino acids. Maximal number of input sequences for SCAMPI-single: 100000. Maximal number of input sequences for SCAMPI-msa: 3. Alternatively, upload a text file in FASTA format upto 100 MB:. Email (recommended for batch submissions):. Force run (do not use cached results):.
SCAMPI: Prediction of membrane protein topology
Thursday, August 13 2015. Prediction of membrane protein topology from first principles. SCAMPI allows for requests of up to 100,000 protein sequences, and is appropriate for large benchmark sets and full proteome scans. If you have only one or a few sequences, use the TOPCONS server. For better predictive performance. SCAMPI can typically process around 20,000 protein sequences per minute, but may take longer, depending on server load. Enter up to 1,000 protein sequences in FASTA.
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