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Massachusetts Institute of Technology. Merck Genome Research Institute. Beth Israel Deaconess Medical Center. St Jude Children's Research Hospital. Upper Austria University of Applied Sciences. July 2, 2012:. The Scan Many Proteins Simultaneously feature has been removed from Scansite due to frequent configuration problems. October 9, 2009:. After finding the motifs in Scansite. Read about the new features. Of Scansite 2.0. The new Scansite 3. Is now available at scansite3.mit.edu. Scansite works best wi...

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Massachusetts Institute of Technology. Merck Genome Research Institute. Beth Israel Deaconess Medical Center. St Jude Children's Research Hospital. Upper Austria University of Applied Sciences. July 2, 2012:. The Scan Many Proteins Simultaneously feature has been removed from Scansite due to frequent configuration problems. October 9, 2009:. After finding the motifs in Scansite. Read about the new features. Of Scansite 2.0. The new Scansite 3. Is now available at scansite3.mit.edu. Scansite works best wi...

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Scansite Menu | scansite.mit.edu Reviews

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Massachusetts Institute of Technology. Merck Genome Research Institute. Beth Israel Deaconess Medical Center. St Jude Children's Research Hospital. Upper Austria University of Applied Sciences. July 2, 2012:. The Scan Many Proteins Simultaneously feature has been removed from Scansite due to frequent configuration problems. October 9, 2009:. After finding the motifs in Scansite. Read about the new features. Of Scansite 2.0. The new Scansite 3. Is now available at scansite3.mit.edu. Scansite works best wi...

INTERNAL PAGES

scansite.mit.edu

1

Input a Motif

http://scansite.mit.edu/addmatrix.phtml?destination=dbsearch_mat.phtml

Input Your Own Motif into Scansite. If you have your own matrix characterizing a binding motif, you can use it with Scansite's database searching and motif scanning routines. Enter a name for your motif below and the filename of the matrix values. The file should be plain text containing tab-delimited columns. See our tutorial for more details about making your own matrix. File of matrix values.

2

Scansite 2.0

http://scansite.mit.edu/scansite_2.html

A new version of Scansite has been developed in recent months to make better use of internal databases, to allow for easier additions of new matrices, and to improve the displayed graphics. Many of the changes were simply to facilitate further development, but some of them will benefit users more directly. This page summarizes the important changes that users will be interested in. One sequence match program allows searching with regular expressions. These are powerful text-matching expressions that ...

3

Input a Motif

http://scansite.mit.edu/addmatrix.phtml?destination=motifscan_mat.phtml

Input Your Own Motif into Scansite. If you have your own matrix characterizing a binding motif, you can use it with Scansite's database searching and motif scanning routines. Enter a name for your motif below and the filename of the matrix values. The file should be plain text containing tab-delimited columns. See our tutorial for more details about making your own matrix. File of matrix values.

4

Scansite Motif Scanner

http://scansite.mit.edu/motifscan_id.phtml

Enter a protein ID and select the motifs you want to scan it for. There are currently 65 motifs available. Search SwissProt/Trembl for entry name. Search GenPept for entry name. Search Ensembl for entry name. 1 Enter Protein ID or Accession Number:. For databases that allow multiple accession numbers for the same entry, use the primary accession number. For Swiss-Prot entries with multiple accession numbers, it is advisable to use the protein ID (e.g., "RB RAT") instead. 2 From This Database:.

5

Scansite Motif Scanner

http://scansite.mit.edu/motifscan_seq.phtml

Enter a protein sequence and select the motifs you want to scan it for. There are currently 65 motifs available. 1 Enter Protein Name:. Numbers and spaces will be removed from sequence if pasted in.). Look for all motifs. Look only for motifs and groups selected below. Calmodulin dependent Kinase 2. PDZ (nNOS) class 1. PDZ (nNOS) class 3. Acidophilic serine/threonine kinase group. Basophilic serine/threonine kinase group. DNA damage kinase group. Kinase binding site group. PDZ domain binding group.

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ppsp.biocuckoo.org

Welcome to use PPSP system

http://ppsp.biocuckoo.org/index.php

Prediction of PK-Specific Phosphorylation Site. Tips for using PPSP. 1please use 20 letters for common amino acids. 2both upper and lower cases are acceptable. 3spaces and returns in sequence are allowable. 4for fasta format, the first line should begin with ' '. 5FASTA format is required when mutliple sequences are submitted at one time. Other Phosphorylation Site Prediction Tools and Resources:. 1 Enter the sequence. Predict by all kinases. Predict by individual kinase below Group Info.

ppsp.biocuckoo.org

Welcome to use PPSP system

http://ppsp.biocuckoo.org/aboutPPSP.php

Prediction of PK-Specific Phosphorylation Site. Other Phosphorylation Site Prediction Tools and Resources:. More detail information about PPSP. PPSP has been updated to version 1.06, now multiple sequences (in FASTA format) can be submitted at one time. A breif introduction to PPSP. W ith the unambiguous experimental verified training data set, PPSP could predict the bona fide phosphorylation sites accurately for 68 PK groups. How to use PPSP:. Acceptable data formats: plain text or FASTA.

mapkinases.eu

Useful links | MAP Kinase Resource

http://www.mapkinases.eu/useful-links

MAP kinases - a kinase family. MAP kinase family members have been found to regulate diverse biological functions by phosphorylation of specific target molecules (such as transcription factors, other kinases, etc.) found in cell membrane, cytoplasm and nucleus, and thereby participate in the regulation of a variety of cellular processes including cell proliferation, differentiation, apoptosis and imuno responses. (Marshall, 1994; Seger and Krebs, 1995);. MAP kinase service provider. UniGene is an experim...

predikin.biosci.uq.edu.au

Related Links

http://predikin.biosci.uq.edu.au/related-links

Selected links of interest to protein researchers. Sorry, we don't have a description of this site. Subcellular Localisation Prediction of Eukaryotic Proteins. NetworKIN is a method for predicting in vivo kinase-substrate relationships, that augments consensus motifs with context for kinases and phosphoproteins. 2009-2011 University of Queensland.

pkr.genomics.purdue.edu

Protein Kinase Resource

http://pkr.genomics.purdue.edu/pkr/static.do?p=/content/links.shtml

Suppliers of Phosphorylation-specific Antibodies. Other Suppliers for Phosphorylation Research. Other Protein Family Resources. Cell Signaling at Los Alamos National Lab. Alliance for Cellular Signaling. Signal Transduction Knowledge Environment. Protein Kinases at Cell Signaling Technology. Kinase Sequence Database - KSD. Scansite - Scans for protein sequence motifs and phosphorylation sites. DISPHOS: Disorder-Enhanced Phosphorylation Sites Predictor. Protein Kinase Substrate Prediction. 800) 645-6264 (...

schuster677s11.weebly.com

Protein Domains - Sox9 & Campomelic Dysplasia

http://schuster677s11.weebly.com/protein-domains.html

Sox9 and Campomelic Dysplasia. Sequence and Chr. Position. This web page was produced as an assignment for Genetics 677. An undergraduate course at UW-Madison. Sox9 protein structure and domains. UniProtKB accession number: P48436. Http:/ www.uniprot.org/uniprot/P48436. Sox9 Protein Domain Structure from SMART database. Going off from the SMART. Interestingly enough, according to SMART. This may be attributed to the fact that the TA domain is not highly conserved in other proteins. Schematic representati...

moleculardetective.org

Links of Interest

http://www.moleculardetective.org/Links.html

Detect and identify biomolecules -. Advance the education and training of 'omics' sciences for high schools. From the laboratory of Dr. Sixue Chen. At the University of Florida. Special Opportunities for High School Students. Florida Junior Academy of Science. University of Florida Center for Precollegiate Education and Training. University of Florida Student Science Training Program. High Quality Proteomics Services. 2-D PolyAcrylamide Gel Electrophoresis (PAGE). 2-D PAGE Database: Swiss 2-D PAGE. Predi...

sadoshimalab.com

Links — Sadoshima Lab

http://sadoshimalab.com/links

Department of Cell Biology and Molecular Medicine. International Mouse Strain Resource. Laboratory for Systems Biology and Medicine. Katz Award AHA Council News - Dr. Tetsuro Ago.

pottslab.org

The Potts Lab - UT Southwestern Medical Center

http://www.pottslab.org//links/index.html

Return to: Department of Cell and Molecular Biology. St Jude Home Page. Bull; About Us. Bull; Lab Fun. Bull; Positions Available. Bull; Contact Us. Bull; Member Area. Nucleic Acid Analysis Tools. Cell and Tissue Imaging. Department of Cell and Molecular Biology. Proteomics and Mass Spectrometry. Transgenic / Gene Knockout. Vector Development and Production. Nucleic Acid Analysis Tools. Agilent BioTools (PCR Primer Tm / Stratalinker Calculator). GenScript Sequencing Primer Design. St Jude PeCan Data Portal.

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SCAN - Ontario's Advanced Technology Community News

Enter your email for a regular newsletter. Who we are and what we're doing. Subscribe to SCAN's RSS feed. Movable Type 3.2. The Geek’s Reading List. 1) Tech’s Enduring Great-Man Myth. Http:/ www.technologyreview.com/review/539861/techs-enduring-great-man-myth/. 2) Is a Cambrian Explosion Coming for Robotics. Http:/ pubs.aeaweb.org/doi/pdfplus/10.1257/jep.29.3.51. 3) How Driverless Cars Could Turn Parking Lots into City Parks. 4) Review: Epson Kills the Printer Ink Cartridge. SanDisk and Toshiba announced...

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Massachusetts Institute of Technology. Merck Genome Research Institute. Beth Israel Deaconess Medical Center. St Jude Children's Research Hospital. Upper Austria University of Applied Sciences. July 2, 2012:. The Scan Many Proteins Simultaneously feature has been removed from Scansite due to frequent configuration problems. October 9, 2009:. After finding the motifs in Scansite. Read about the new features. Of Scansite 2.0. The new Scansite 3. Is now available at scansite3.mit.edu. Scansite works best wi...

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Rideau Canal And All That | How Canada Came To Be Best

Rideau Canal And All That. How Canada Came To Be Best. Skip to primary content. Skip to secondary content. ABOUT RIDEAU CANAL AND ALL THAT. A century standing by. On a warm summer day in 1985, Pammy. Grandson* looked on as Elmer MacKay. Solicitor general of Canada. Inaugurated the museum at Kingston Penitentiary. He was a member of the ministerial party because he had co-authored a history of the place. It was the sesquicentennial of the arrival, on June 1, 1835, of Matthew Tavender. On the bar above.

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Co-op Canada Accelerator | "Outsiders will not readily learn about a movement that does not broadly project into the public square what it is and why it is important." — Ian MacPherson

Outsiders will not readily learn about a movement that does not broadly project into the public square what it is and why it is important. — Ian MacPherson. Skip to primary content. Skip to secondary content. ABOUT CO-OP CANADA ACCELERATOR. RIDEAU CANAL AND ALL THAT. Investment fund releases business case. The Canadian Co-operative Investment Fund. CCIF) has released its business case. CCIF is the showcase venture capital initiative of Co-operatives and Mutuals Canada. Co-operatives and Mutuals Canada.