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The NEW Scansite 3Scansite 3 - kinase-substrate interaction prediction and short linear sequence motif discovery.
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Scansite 3 - kinase-substrate interaction prediction and short linear sequence motif discovery.
http://scansite3.mit.edu/
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Scansite 3 - kinase-substrate interaction prediction and short linear sequence motif discovery.
ELM - Help
http://elm.eu.org/help.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. What methods are used for detecting functional sites? Currently, patterns written as regular expressions. Why are the ELM predictions not scored? Since a regular expression either matches or does not match a string (or a protein subsequence), in its nature the score would be 1 or 0. What does the ELM instance mapper do? Uses PHI-BLAST to map ELM predictions of a query sequence to known annotated ELM instances. The basis for the m...
ELM - Help
http://elm.eu.org/infos/help.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. What methods are used for detecting functional sites? Currently, patterns written as regular expressions. Why are the ELM predictions not scored? Since a regular expression either matches or does not match a string (or a protein subsequence), in its nature the score would be 1 or 0. What does the ELM instance mapper do? Uses PHI-BLAST to map ELM predictions of a query sequence to known annotated ELM instances. The basis for the m...
ELM - Links
http://elm.eu.org/infos/links.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. The ELM Conservation Scorer assigns a score to each ELM which corresponds to this ELM's conservation throughout homologous sequences. Exploring Interactions of Linear Motifs. The Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in metazoan proteins. The compendium of conditional regulatory interaction interfaces. Other general motif resources. GPI Modification Site Prediction.
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Massachusetts Institute of Technology. Merck Genome Research Institute. Beth Israel Deaconess Medical Center. St Jude Children's Research Hospital. Upper Austria University of Applied Sciences. July 2, 2012:. The Scan Many Proteins Simultaneously feature has been removed from Scansite due to frequent configuration problems. October 9, 2009:. After finding the motifs in Scansite. Read about the new features. Of Scansite 2.0. The new Scansite 3. Is now available at scansite3.mit.edu. Scansite works best wi...
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