qiime.org
Illumina Overview Tutorial (an IPython Notebook): open reference OTU picking and core diversity analyses — Homepage
http://qiime.org/tutorials/illumina_overview_tutorial.html
News and Announcements ». Illumina Overview Tutorial (an IPython Notebook): open reference OTU picking and core diversity analyses. This tutorial is provided as an IPython Notebook. See the Illumina Overview Tutorial IPython Notebook. OTU picking strategies in QIIME. 454 Overview Tutorial: de novo OTU picking and diversity analyses using 454 data. Enter search terms or a module, class or function name.
qiime.org
QIIME Tutorials — Homepage
http://qiime.org/tutorials/index.html
News and Announcements ». The QIIME tutorials illustrate how to use various features of QIIME. We recommend that all users begin with either the QIIME Illumina Overview Tutorial. Or the QIIME 454 Overview Tutorial. These tutorials take the user through a full analysis of sequencing data. After you’ve begun analyzing your own data, you’ll want to move on to the special-purpose tutorials as needed. If you’re interested in contributing. OTU picking strategies in QIIME. Analysis of 18S data. Creating Distanc...
qiime.org
QIIME Virtual Box — Homepage
http://qiime.org/install/virtual_box.html
News and Announcements ». As a consequence of QIIME’s. Architecture, QIIME has a lot of dependencies and can (but doesn’t have to) be very challenging to install. The QIIME Virtual Box gets around the difficulty of installation by providing a functioning QIIME full install inside an Ubuntu Linux virtual machine. You can use the QIIME Virtual Box on Mac OS X, Windows, or Linux. It is strongly recommended that your system have 8 gigabytes or more of memory to use the QIIME Virtual Box. Select “Use ex...
microbe.net
Teaching bioinformatics using IPython Notebooks – microBEnet: the microbiology of the Built Environment network.
http://microbe.net/2014/05/01/teaching-bioinformatics-using-ipython-notebooks
Skip to main content. Media Coverage of microBEnet. Meetings and Conference Reports. Microbiology blog of the day series. Microbial Ecology in the Built Environment. Ribosomal RNA (rRNA), the details. RRNA in Evolutionary Studies and Environmental Sampling. Sloan Program on the Microbiology of the Built Environment. Full List of Sloan Grants. Microbiology of the Built Environment Network (microBEnet). Biology and the Built Environment (BioBE) Center. IM-BOL: The Indoor Mycota Barcode of Life. May 1, 2014.
terragenome.org
TerraGenome » Workshops
http://www.terragenome.org/workshops
Dates: 29-30 September 2016. Location: Noble Foundation, Ardmore, OK. There are 10 available slots for QIIME training opportunity. A limited number of student / postdoc travel awards are available for workshop participants. Accommodation and food will be provided for all the participants by the workshop organizers. Please email us if you are interested in attending the workshop at pkankanala@noble.org. By September 10th 2016. Applicant must be a student or postdoctoral researcher. Dates: 4-5 November 2016.
ilovesymposia.com
Python | I Love Symposia!
https://ilovesymposia.com/tag/python
Science and Tech for the Small Fry. The cost of a Python function call. December 10, 2015. I’ve read in various places that the Python function call overhead is very high. As I was parroting this “fact” to Ed Schofield. Recently, he asked me what the cost of a function actually was. I had no idea. This prompted us to do a few quick benchmarks. The short version is that it takes about 150ns to call a function in Python (on my laptop). This doesn’t sound like a lot, but it means that you can make. Lose two...
ilovesymposia.com
Go to SciPy 2015 | I Love Symposia!
https://ilovesymposia.com/2015/03/23/go-to-scipy-2015
Science and Tech for the Small Fry. Go to SciPy 2015. March 23, 2015. Is my favourite conference. My goal with this post is to convince someone to go who hasn’t had that chance yet. Most scientists go to conferences in their own field: neuroscientists go to the monstrous Society for Neuroscience (SfN); Bioinformaticians go to RECOMB, ISMB, or PSB; and so on. People go to these to keep up with the latest advances in their field, and often, to do a bit of networking. SciPy is a different kind of conference.
ilovesymposia.com
conference | I Love Symposia!
https://ilovesymposia.com/category/conference
Science and Tech for the Small Fry. October 9, 2015. The videos from EuroSciPy 2015 are up. This marks a good time to write up my thoughts on the conference. That the yearly SciPy conference is stunningly useful. This year I couldn’t make it to Austin, but I did attend EuroSciPy. The European version of the same conference, in Cambridge, UK. It was spectacular. The talk of the conference, for me, goes to Robin Wilson for recipy. I also enjoyed Nicolas Rougier’s talk. A new journal dedicated to replicated...
