SKYLIGN.ORG

Skylign

Interactive logos for alignments and profile HMMs. Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models. Submit to the form on the right in order to produce (i) interactive logos for inclusion in webpages, or (ii) static logos for use in documents. Upload an HMM or Multiple sequence alignment. Create HMM - keep all columns. Create HMM - remove mostly-empty columns. Alignment sequences are full length. Some sequences are fragments.

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Travis Wheeler

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Skylign | skylign.org Reviews

<META> DESCRIPTION

Interactive logos for alignments and profile HMMs. Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models. Submit to the form on the right in order to produce (i) interactive logos for inclusion in webpages, or (ii) static logos for use in documents. Upload an HMM or Multiple sequence alignment. Create HMM - keep all columns. Create HMM - remove mostly-empty columns. Alignment sequences are full length. Some sequences are fragments.

<META> KEYWORDS

1 skylign

2 see an example

3 create your logo

4 alignment processing

5 use observed counts

6 use weighted counts

7 fragment handling

8 letter height

9 score

10 dynamic logos

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skylign,see an example,create your logo,alignment processing,use observed counts,use weighted counts,fragment handling,letter height,score,dynamic logos,export options,lsaquo;,rsaquo;,skylign org

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Skylign | skylign.org Reviews

https://skylign.org

Interactive logos for alignments and profile HMMs. Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models. Submit to the form on the right in order to produce (i) interactive logos for inclusion in webpages, or (ii) static logos for use in documents. Upload an HMM or Multiple sequence alignment. Create HMM - keep all columns. Create HMM - remove mostly-empty columns. Alignment sequences are full length. Some sequences are fragments.

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skylign.org

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Skylign

http://www.skylign.org/help

What is a logo? What is shown in a logo? Using the Logo Elsewhere. What is a logo? Logos are commonly used in molecular biology to provide a compact graphical representation of the conservation pattern of a set of sequences. They render the information contained in sequence alignments or profile hidden Markov models by drawing a stack of letters for each position, where. The height of the stack typically corresponds to the conservation at that position, and. What is shown in a logo? The height of each le...

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cryptogenomicon.org

Cryptogenomicon | Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab | Page 2

https://cryptogenomicon.org/page/2

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. Newer posts →. HMMER mission control: we are go for launch vehicle separation(s). June 2, 2015. Were officially launched today. At the EMBL European Bioinformatics Institute (EBI). In Cambridge UK. You can read an EBI press release here. This marks the completion of the pilot HMMER server project at Janelia Farm and its transition to the EBI. All of this has been led by Rob Finn,. Because of the terrifyingly sophisticated ...

genomeinformatics.uni-due.de

Software | Genome Informatics

http://genomeinformatics.uni-due.de/software

Vorlesung “Algorithmen auf Sequenzen”. Vorlesung “Algorithmische Bioinformatik”. Vorlesung “Computational Omics”. Seminar “Aktuelle Themen der Bioinformatik”. A Python-like and make-like programming language for data analysis workflows, especially popular in the NGS community. Primary processing of NGS reads (454, Illumina, SOLiD, …): quality trimming, adapter cutting, name mangling, etc. A read simulator for third generation sequencing reads focused on the Pacific Biosciences SMRT error model. Methods f...

cryptogenomicon.org

HMMER | Cryptogenomicon

https://cryptogenomicon.org/category/hmmer

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. August 23, 2015. Hmmerorg is moving off of Janelia tonight, into the great cloud. You may see some flakiness as DNS nameservers update. HMMER mission control: we are go for launch vehicle separation(s). June 2, 2015. Were officially launched today. At the EMBL European Bioinformatics Institute (EBI). In Cambridge UK. You can read an EBI press release here. From the servers ( www.ebi.ac.uk/Tools/hmmer/). Will continue to be...

cryptogenomicon.org

HMMER 3.1 beta test 2 released | Cryptogenomicon

https://cryptogenomicon.org/2015/04/15/hmmer-3-1-beta-test-2-released

Genome sequence analysis, the HMMER and Infernal projects, and the Eddy/Rivas lab. HMMER 3.1 beta test 2 released. April 15, 2015. Anyhoo, moving right along. The 3.1b2 code is publicly available as a tarball available for download. Or from hmmer.org. Where you’ll also find precompiled binary releases for Mac and Linux. The most significant upgrade in 3.1b2 is that the nhmmer. Command, and then use nhmmer –tformat hmmerfm. To search the binary FM-index database, you’ll use the new acceleration. Tend to d...

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skylign.org

Skylign

Interactive logos for alignments and profile HMMs. Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models. Submit to the form on the right in order to produce (i) interactive logos for inclusion in webpages, or (ii) static logos for use in documents. Upload an HMM or Multiple sequence alignment. Create HMM - keep all columns. Create HMM - remove mostly-empty columns. Alignment sequences are full length. Some sequences are fragments.

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