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tinyEcology | marine microbial ecology | tinyecology.com Reviews
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marine microbial ecology
tinyecology.com
An Updated Genome for Ruegeria pomeroyi DSS-3 - tinyEcology | tinyEcology
http://tinyecology.com/an-updated-genome-annotation-for-the-model-marine-bacterium-ruegeria-pomeroyi-dss-3
Adam R. Rivers, PhD. An Updated Genome for Ruegeria pomeroyi DSS-3. Posted by Adam Rivers. On Dec 13, 2013 in Research. When the genome of Ruegeria pomeroyi. The updated genome was just made public at NCBI. And I have submitted an article to the journal. Standards in Genomic Sciences. Summarizing the changes and reviewing the progress made in understanding the biology of Ruegeria pomeroyi. DSS-3 over the last 9 years. Assembling metatranscriptomes with Megahit. Viral metagenomic gene calling.
Blog Archives - tinyEcology | tinyEcology
http://tinyecology.com/category/blog
Adam R. Rivers, PhD. Assembling metatranscriptomes with Megahit. Viral metagenomic gene calling. Using Ruby to retrieve KEGG orthologies in bulk. Building online interactive marine maps using ArcGIS server data. Oil spill work featured in the ISME Journal. Our Deepwater Horizon oil spill article came out in this month’s ISME Journal and it was selected as a featured article. Access is now free. Open Innovation and InnoCentive. Laquo; Older Entries. Assembling metatranscriptomes with Megahit.
Building online interactive marine maps using ArcGIS server data - tinyEcology | tinyEcology
http://tinyecology.com/building-online-interactive-marine-maps-using-arcgis-server-data
Adam R. Rivers, PhD. Building online interactive marine maps using ArcGIS server data. Posted by Adam Rivers. On Jan 5, 2014 in Blog. In environmental and marine science its often useful to map data interactively. Specialized desktop GIS software Like Ocean Data View is familiar to many oceanographers and there are Matlab libraries like SeaMat, python/ArcGIS tools like MGET and R packages like OCE for plotting spatial data, but these are not generally interactive. Loading the JavaScript libraries. After ...
Publications - tinyEcology | tinyEcology
http://tinyecology.com/publications
Adam R. Rivers, PhD. DW Kemp, A.R. Rivers, K.M. Kemp, E.K. Lipp, J.W. Porter, J.P. Wares. 2016. Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata PLOS e 11(1) doi:10.1371/journal.pone.0143790. Beier, S., Rivers, A.R. Moran, M.A. Obernosterer, I. 2015. Phenotypic Plasticity in heterotrophic marine microbial communities in continuous cultures. ISME Journal. Doi: 10.1038/ismej.2014.206. Rivers, A. R. Standards in Genomic Sciences.
Fidoplankter: an online calculator for iron culturing - tinyEcology | tinyEcology
http://tinyecology.com/fidoplankter-an-online-calculator-for-iron-culturing
Adam R. Rivers, PhD. Fidoplankter: an online calculator for iron culturing. Posted by Adam Rivers. On Nov 19, 2012 in Research. Grunow) Fryxell and Hasle. Modeling reveals that the assumptions behind thermodynamic estimates of unchelated Fe concentration can fail before easily perceptible changes in growth rate, potentially causing physiological changes that could alter the conclusions of culture experiments. This work has been published the Journal of Phycology ( doi: 10.1111/jpy.12107.
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tinyEcology | marine microbial ecology
Adam R. Rivers, PhD. Microbes have the power to profoundly alter entire ecosystems. ”. Bioinformatic tools provide unprecedented insight into microbial communities. Assembling metatranscriptomes with Megahit. Megahit is a new genome assembler that uses a succinct representation of a de Bruijn graph to rapidly iterates over multiple kmers and assemble genomes with about 10 fold lower memory requirements than most assemblers. The application was. An Updated Genome for Ruegeria pomeroyi DSS-3. Laboratory ex...
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