trafac.cchmc.org

TraFaC

Welcome to the UC/CHMC TraFaC Homology Server. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using Trafac, please cite Jegga et al., Genome Research 12: 1408-1417, September 2002. We are grateful for support from.

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TraFaC | trafac.cchmc.org Reviews

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Welcome to the UC/CHMC TraFaC Homology Server. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using Trafac, please cite Jegga et al., Genome Research 12: 1408-1417, September 2002. We are grateful for support from.

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4 conserved cis

5 element scanner

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TraFaC | trafac.cchmc.org Reviews

https://trafac.cchmc.org

Welcome to the UC/CHMC TraFaC Homology Server. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using Trafac, please cite Jegga et al., Genome Research 12: 1408-1417, September 2002. We are grateful for support from.

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trafac.cchmc.org

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TraFaC

https://trafac.cchmc.org/trafac/pipMakerJob;jsessionid=926F48289677D46C34D0708CF08E2F5D

Clusters within BlastZ alignment: Select the Sequence(s). Clusters within BlastZ alignment: Select the Sequence(s)" /. Calcium Activated Chloride Channel. Celera Genes - Human. Celera Genes - Mouse. Gastroenterology Bates et al. Human Cell Cycle Control Genes Upstream Region. Human DNA Repair Genes Upstream Region. Human MHC Class I and II Promoters. Liver-Specific Promoters (EPD) - Human. Liver-Specific Promoters (EPD) - Mouse. Lymphocyte Activation and Cytokines. Oncogenes (GI and Others).

2

TraFaC

https://trafac.cchmc.org/trafac/disclaimer.jsp;jsessionid=926F48289677D46C34D0708CF08E2F5D

All the annotations for TFBS-PWMs were obtained from Genomatix. Our web application is not meant to be a substitute for Genomatix and the services provided by them. For further details and annotations, please register at Genomatix. For a login account. Developed by the Division of BioMedical Informatics.

3

TraFaC

https://trafac.cchmc.org/trafac/index.jsp;jsessionid=926F48289677D46C34D0708CF08E2F5D

Welcome to the UC/CHMC TraFaC Homology Server. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using Trafac, please cite Jegga et al., Genome Research 12: 1408-1417, September 2002. We are grateful for support from.

4

TraFaC

https://trafac.cchmc.org/trafac/ShowFamily;jsessionid=926F48289677D46C34D0708CF08E2F5D

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search. To modify the default 10 KB sequence region ). B) Choose region :. C) With respect to :. Select binding sites for search against genes :. Family Name And Description. Matrix Name And Description. V$AARF - AARE binding factors. V$AARE.01 - Amino acid response element, ATF4 binding site. V$AARE 01 - Amino acid response element, ATF4 binding site. V$AHRR - AHR-arnt heterodimers and AHR-related factors. V$AP1 01 - AP-1.

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genometrafac.cchmc.org

GenomeTraFaC

https://genometrafac.cchmc.org/genome-trafac/about.jsp;jsessionid=8132036BA6BF83505329D5D06D6D8756

GenomeTraFaC is a database of conserved regulatory elements obtained by systematically analyzing the orthologous set of human and mouse genes. It mainly focuses on all of the high-quality mRNA entries of mouse and human genes in the Reference Sequence. RefSeq) database of the NCBI. The identification of conserved potential cis-regulatory regions was done in a computational pipeline fashion using an advanced version of our earlier developed TraFaC. Developed by the Division of BioMedical Informatics.

anil.cchmc.org

List of Projects | Anil Jegga

https://anil.cchmc.org/projects

To achieve my research goals, I use genomics (functional and comparative) and computational biology tools (bioinformatic approaches). Here's a list of our efforts - including past and current, and also those in pipeline. In-house developed and published online databases and servers. Http:/ trafac.cchmc.org. Http:/ info.cchmc.org/help/trafac/index.html. Jegga et al., 2002. Citing articles via Google Scholar. Http:/ cismols.cchmc.org. Http:/ info.cchmc.org/help/cismols/index.html. Jegga et al., 2005. Web-a...

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trafac.cchmc.org

TraFaC

Welcome to the UC/CHMC TraFaC Homology Server. Element clusters within BlastZ Alignments. Element clusters within BlastZ-identified conserved sequence alignment blocks. Elements shared between any gene pair. Elements between user-selected gene segment pairs. Genome-wide ortholog conserved Cis-element module search. If you publish results obtained using Trafac, please cite Jegga et al., Genome Research 12: 1408-1417, September 2002. We are grateful for support from.

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