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TransTermHP

Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. And SL. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. 1), 27-33 (2000). Last upd...

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Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. And SL. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. 1), 27-33 (2000). Last upd...

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TransTermHP | transterm.cbcb.umd.edu Reviews

https://transterm.cbcb.umd.edu

Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. And SL. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. 1), 27-33 (2000). Last upd...

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TransTermHP

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Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. And SL. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. 1), 27-33 (2000). Last upd...

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TransTermHP

http://transterm.cbcb.umd.edu/cgi-bin/transterm/predictions.pl

Click on a organism in the table below to view its transcription terminator predictions. These files contain all terminator-like hairpins with confidence score = 30. Sequence and .ptt annotations were taken from GenBank. On June 6, 2006. The predictions were last updated on Sep. 7, 2006. Download the complete predictions for. The best terminator following each gene. 29 MB, ZIP file), or. The best terminators within robust tail-to-tail regions. 9MB, ZIP file). Acaryochloris marina MBIC11017 plasmid pREB9.

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TransTermHP

http://transterm.cbcb.umd.edu/query.php

Have confidence ≥. Between 0 and 100, inclusive). Require terminator to be directed with region. Have stem length ≥. Have hairpin score ≤. And tail score ≤. Contain the DNA sequence. Are 1kb downstream of genes. Eg pheT (use ',' for multiple genes). Genes with description containing. Last updated: Sep. 11, 2006.

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What is Computational Biology? List of Educational Programs in Computational Biology. CBD at a Glance. PhD in Computational Biology. MS in Computational Biology. MS in Biotech Innovation and Computation. BS in Computational Biology. Why Major in Computational Biology? Sample Course Sequence for Computational Biology Majors. Minor in Computational Biology. Computational Biology Technical Reports. Apply to Ph.D. Program. Apply to Undergraduate Program. What is Computational Biology? CBD at a Glance. DECOD ...

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TransTermHP

Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. And SL. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. 1), 27-33 (2000). Last upd...

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TransTermHP

Finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in:. Kunmi Ayanbule, and Steven Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. A predecessor system, TransTerm, that used very different search and scoring algorithms is described in:. Last up...

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