trifldb.psc.riken.jp

TriFLDB:Triticeae Full-Length CDS Database

Triticeae full-length CDS database. That were newly sequenced in RIKEN. And Kihara Institute for Biological Research, Yokohama City University supported by National Bio Resource Project in Japan. Protein domain organization and GeneOntology assignment. Protein domain searches for TriFLCDS entries were carried out by using the iprscan program. The GO terms assigned with each entry have also interrelated based on iprscan search. Plant Physiol. 2009 May 15. To predict the gene structure of each TriFLCDS, SI...

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TriFLDB:Triticeae Full-Length CDS Database | trifldb.psc.riken.jp Reviews

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Triticeae full-length CDS database. That were newly sequenced in RIKEN. And Kihara Institute for Biological Research, Yokohama City University supported by National Bio Resource Project in Japan. Protein domain organization and GeneOntology assignment. Protein domain searches for TriFLCDS entries were carried out by using the iprscan program. The GO terms assigned with each entry have also interrelated based on iprscan search. Plant Physiol. 2009 May 15. To predict the gene structure of each TriFLCDS, SI...

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TriFLDB:Triticeae Full-Length CDS Database | trifldb.psc.riken.jp Reviews

https://trifldb.psc.riken.jp

Triticeae full-length CDS database. That were newly sequenced in RIKEN. And Kihara Institute for Biological Research, Yokohama City University supported by National Bio Resource Project in Japan. Protein domain organization and GeneOntology assignment. Protein domain searches for TriFLCDS entries were carried out by using the iprscan program. The GO terms assigned with each entry have also interrelated based on iprscan search. Plant Physiol. 2009 May 15. To predict the gene structure of each TriFLCDS, SI...

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trifldb.psc.riken.jp

1

TriFLDB:Triticeae Full-Length CDS Database

http://trifldb.psc.riken.jp/v3/blast.pl

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. Full-length cDNA (6,162 seq). Full-length cDNA (5,740 seq). Full-length cDNA (4,905 seq). Peptide (6,146 seq). Peptide (5,730 seq). This site...

2

TriFLDB:Triticeae Full-Length CDS Database

http://trifldb.psc.riken.jp/v3/download.pl

Currently available full-length cDNA sequence data. Currently available full-length cDNA sequence data. Newly sequenced wheat FLcDNA (2.7 MB). New 5,740 FLcDNAs dataset of wheat (2.8 MB). Download (2.3 MB). Download (2.3 MB). Download (3.2 MB). Download (1.5 MB). Download (3.2 MB). Download (1.5 MB). Download (6.7 MB). Download (3.1 MB). Download (6.6 MB). Download (3.1 MB). Mapping to Rice (IRGSP build 4). Mapping to Rice (IRGSP build 4) (filtered). Mapping to Sorghum (filtered). Download (1.4 MB).

3

TriFLDB:Triticeae Full-Length CDS Database

http://trifldb.psc.riken.jp/index.pl

Keyword search ver.2.0. Similarity search ver.2.0. TriFLDB ver.3.0] Newly opened. Newly sequenced wheat FLcDNA (2.7 MB). New 5740 FLcDNAs dataset of wheat (2.8 MB). From NBRP Komugi and RIKEN is available now as a beta release, please visit ' Keyword search ver.2.0. And ' Similarity search ver.2.0. Relations to TriMEDB ver.2.0 have been imprimented. Search interface for domain database has been imprimented. That were newly sequenced in. National Bio Resource Project in Japan. Homology mapping onto the ri...

4

TriFLDB:Triticeae Full-Length CDS Database

http://trifldb.psc.riken.jp/v3/help.pl

A user can search through TriFLCDS entries using 3 different string-based queries, namely, sequence name, keywords of predicted gene function, and related GO terms. A user can click on the entry name and browse through detailed information. As shown in this example of RFL Contig5293, the search results are listed with the results of homology searches against various public databases. Detailed information of each TriFLCDS entry. Nucleotide sequences and the deduced protein sequences are shown in fasta for...

5

TriFLDB:Triticeae Full-Length CDS Database

http://trifldb.psc.riken.jp/v3/tools.pl?t=gbrowse&sp=Bdi

GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. MIPS / Phytozome annotation. We disclaim any and all liability that may result from any temporary disruption of service or inability to access this web site. We will endeavor to restore service and correct such problems as soon as practicable. RIKEN Biomass Engineering Program. 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa, 230-0045, Japan. Database and Web Development.

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hwwgenotyping.ksu.edu

HWWGL Manhattan KS - Links

http://www.hwwgenotyping.ksu.edu/links.html

USDA CENTRAL SMALL GRAIN GENOTYPING LAB, MANHATTAN KS. Genome-Wide Association Mapping Reveals Novel QTL for Seedling Leaf Rust Resistance in a Worldwide Collection of Winter Wheat. Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat. Multiple Minor QTLs Are Responsible for Fusarium Head Blight Resistance in Chinese Wheat Landrace Haiyanzhong. Single Nucleotide Polymorphisms Linked to Quantitative Trait Loci for Grain Quality Traits in Wheat. Communit...

rye.pw.usda.gov

Triticeae full-length CDS database | GrainGenes

http://rye.pw.usda.gov/GG3/node/160

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Triticeae full-length CDS database. Triticeae full-length CDS database. GrainGenes is a product of the Agricultural Research Service. Of the US Department of Agriculture.

wheatgenome.org.uk

Triticeae Genomics For Sustainable Agriculture - the Wheat LoLa Project

http://www.wheatgenome.org.uk/FurtherInformation.html

Triticeae Genomics For Sustainable Agriculture. BBSRC project No. BB/J003743/1. Theme 1 - Sequence Data. Theme 2 - Variation. Theme 3 - Databases And Outreach. The research progress and outputs from each theme are presented within each theme page. The full proposal for this project can be found here: WheatLoLaProject.pdf. Wheat-related websites and resources. Global Food Security Programme. 20:20 Wheat Programme at RRES. Calculation of wheat consumption per person per day!

oatnews.com

Triticeae full-length CDS database | GrainGenes

http://www.oatnews.com/GG3/node/160

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Triticeae full-length CDS database. Triticeae full-length CDS database. GrainGenes is a product of the Agricultural Research Service. Of the US Department of Agriculture.

wheat.pw.usda.gov

Triticeae full-length CDS database | GrainGenes

http://wheat.pw.usda.gov/GG3/node/160

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Triticeae full-length CDS database. Triticeae full-length CDS database. GrainGenes is a product of the Agricultural Research Service. Of the US Department of Agriculture.

archive.plants.ensembl.org

Triticum aestivum - Ensembl Genomes

http://archive.plants.ensembl.org/Triticum_aestivum/Info/Index

Triticum aestivum (IWGSC1 popseq). Eg Traes 1BS 1172A6B03. The bread wheat genome in Ensembl Plants is the Chromosome Survey Sequence (CSS) for Triticum aestivum. Cv Chinese Spring, combined with the reference sequence of chromosome 3B, both generated by the International Wheat Genome Sequencing Consortium. The CSS assemblies have been further refined into chromosomal pseudomolecules using POPSEQ data generated by Chapman. The gene models for 3B were annotated by the GDEC group. More information and stat...

dev.gramene.org

Triticum aestivum - Ensembl Genomes

http://dev.gramene.org/Triticum_aestivum/Info/Index

Triticum aestivum (IWGSC1 popseq). Eg Traes 1BS 1172A6B03. What's New in Triticum aestivum release 84. A "pre-release" site offering early access to a new assembly of. Cv Chinese Spring is now available here. This assembly has generated by The Genome Analysis Centre. Norwich, as part of the BBSRC-funded project, Triticeae Genomics for Sustainable Agriculture. And will be progressively annotated over the following months before inclusion in the main Ensembl site. Which hybridized again with. Download gene...

psc.riken.go.jp

データベース | 独立行政法人理化学研究所植物科学研究センター

http://www.psc.riken.go.jp/database/index.html

RIKEN Arbidopsis Genome Encyclopedia (RARGE). Platform for RIKEN Metabolomics (PRIMe). Transcripotme Analysis of BY-2 (TAB). PSC-RIKEN Database of EST/Gene Expression (PRIDE). TriMEDB:Triticeae Mapped EST DataBase. RIPP-DB(RIKEN Plant Phosphoproteome Database). Phenome Analysis of Ds transposon-tagging line in Arabidopsis (RAPID). Arabidopsis Gene Expression profile DataBase (AtGenExpress. RIKEN Activation Tagging Line Database. TriFLDB: Triticeae Full-Length CDS DataBase.

plant-pras.riken.jp

Plant-PrAS

http://plant-pras.riken.jp/menta.cgi/links/links

GC/MS, LC/MS, CE/MS . A Web site that assembles tools for metabolomics and transcriptomics. 8 339-345 (2008) [PubMed]. Innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. 54(2) e5(1-8) (2013) [PubMed]. A collection of literature and in-house MSn spectra data for research on plant metabolomics. 82 38-45 (2012) [PubMed]. A tool for liquid chromatography-fourier transfer ion cyclotron resonance-mass spectrometry (LC-FTICR-MS). Phenome, cDNA, mutant .

psc.riken.jp

データベース | 独立行政法人理化学研究所植物科学研究センター

http://www.psc.riken.jp/database/index.html

RIKEN Arbidopsis Genome Encyclopedia (RARGE). Platform for RIKEN Metabolomics (PRIMe). Transcripotme Analysis of BY-2 (TAB). PSC-RIKEN Database of EST/Gene Expression (PRIDE). TriMEDB:Triticeae Mapped EST DataBase. RIPP-DB(RIKEN Plant Phosphoproteome Database). Phenome Analysis of Ds transposon-tagging line in Arabidopsis (RAPID). Arabidopsis Gene Expression profile DataBase (AtGenExpress. RIKEN Activation Tagging Line Database. TriFLDB: Triticeae Full-Length CDS DataBase.

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TriFLDB:Triticeae Full-Length CDS Database

Triticeae full-length CDS database. That were newly sequenced in RIKEN. And Kihara Institute for Biological Research, Yokohama City University supported by National Bio Resource Project in Japan. Protein domain organization and GeneOntology assignment. Protein domain searches for TriFLCDS entries were carried out by using the iprscan program. The GO terms assigned with each entry have also interrelated based on iprscan search. Plant Physiol. 2009 May 15. To predict the gene structure of each TriFLCDS, SI...

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