wfleabase.org

Daphnia Genomics

Of Daphnia pulex and other species, including bulk data files, and all gene pages. Tools including microsatellites, cDNA, Cosmid and BAC libraries, GSS and ESTs, microarrays. Genome database development notes, tools and programs. Of Daphnia genome, and genome annotation tools. About this genome web. Daphnia [AT] iubio.bio.indiana.edu. Daphnia genomes at the crossroads. 2015 March: Daphnia magna. 2010 April: Daphnia pulex. 2007 July: Daphnia pulex. Public release 1 and genome summaries. DGC) whose members...

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Daphnia Genomics | wfleabase.org Reviews

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Of Daphnia pulex and other species, including bulk data files, and all gene pages. Tools including microsatellites, cDNA, Cosmid and BAC libraries, GSS and ESTs, microarrays. Genome database development notes, tools and programs. Of Daphnia genome, and genome annotation tools. About this genome web. Daphnia [AT] iubio.bio.indiana.edu. Daphnia genomes at the crossroads. 2015 March: Daphnia magna. 2010 April: Daphnia pulex. 2007 July: Daphnia pulex. Public release 1 and genome summaries. DGC) whose members...

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1 wfleabase

2 blast

3 biomart

4 gbrowse maps

5 genomics

6 gene pages

7 sequences

8 web docs

9 daphnia genome project

10 genome

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Daphnia Genomics | wfleabase.org Reviews

https://wfleabase.org

Of Daphnia pulex and other species, including bulk data files, and all gene pages. Tools including microsatellites, cDNA, Cosmid and BAC libraries, GSS and ESTs, microarrays. Genome database development notes, tools and programs. Of Daphnia genome, and genome annotation tools. About this genome web. Daphnia [AT] iubio.bio.indiana.edu. Daphnia genomes at the crossroads. 2015 March: Daphnia magna. 2010 April: Daphnia pulex. 2007 July: Daphnia pulex. Public release 1 and genome summaries. DGC) whose members...

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server7.wfleabase.org

Daphnia Genomics

Of Daphnia pulex and other species, including bulk data files, and all gene pages. Tools including microsatellites, cDNA, Cosmid and BAC libraries, GSS and ESTs, microarrays. Genome database development notes, tools and programs. Of Daphnia genome, and genome annotation tools. Collections of Daphnia lab and wild populations. File transfer of large data files. About this genome web. Daphnia [AT] iubio.bio.indiana.edu. 2015 March: Daphnia magna. 2010 April: Daphnia pulex. 2007 July: Daphnia pulex. JGI) in ...

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wfleabase.org

1

Daphnia pulex

http://wfleabase.org/gbrowse

New 2010.4: Daphnia Genes 2010. Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Download Decorated FASTA File. Download Protein Sequence File. Express Map: Cad,Cha,Met,Sex. Express XY: Cad,Cha,Met,Sex. Dp microarray probe : CGB. Microsatellites and tandems repeats. EST gene updates: PASA. JGI v1.1 genes. Add your own tracks. Add your own tracks.

2

Index of /genome

http://wfleabase.org/genome

Model Organism Database Standard URLs. WFleaBase Genome Data Sets. In order to simplify the retrieval of common datasets, the Generic Model Organisms Database (GMOD) community has implemented a series of standard URLs. Each MOD {will/should} have an index page like this one describing the species and datasets that are available. Read more about the GMOD project at www.gmod.org. Display this HTML-formatted index page that contains links to each of the species available through common URLs.

3

Index of /release1

http://wfleabase.org/release1

Genome release 1, 2007/07/07. Please read the Daphnia pulex Data Release Policy. 31-Jan-2011 20:26 - BLAST assembly versions, predicted genes, genome map links. PASA gene annotation.html. 03-Mar-2009 16:11 48k Program to Assemble Spliced Alignments. 09-Dec-2008 10:03 - 2006.09 assembly annotations, EST and data. 30-Mar-2008 14:08 - Genome summary charts (homology genes, gene structure, phylogeny). 26-Jul-2006 13:07 - Gene Ontology associations for Daphnia and insects.

4

wFleaBase: send inquiries and feedback

http://wfleabase.org/templates/help-email.html

Submit inquiries and feedback to wFleaBase. This Daphnia genomic information system aims to serve a diverse bioscience community. Your feedback is essential for meeting the needs of this community. We encourage corrections or additions to the wFleaBase data. We also welcome comments about the types of data that we now (or should) make available, or about the structure of this service. Please e-mail all communications and questions to: daphnia AT wfleabase DOT org.

5

Daphnia pulex Genome Open Access

http://wfleabase.org/genome-summaries

Daphnia pulex Genome Open Access. Open Access to Daphnia pulex Genome. The arthropod crustacean Daphnia pulex (better known as the water flea) is a unique emerging model organism, straddling the genome reach of vertebrate model organisms such as Mouse, insects such as Drosophila, and nematodes such as Caenorhabditis elegans. A great example of this genome-environment connection comes from Daphnia's well known hemoglobin response, called into play as they rapidly turn blood-red when oxygen is depleted in ...

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marmot.bio.indiana.edu

GIL: Genome Informatics Lab

http://marmot.bio.indiana.edu/gil

Conducts research on bioinformatics areas of gene and genome data management and distribution. Particular areas of investigation include. Of biology software and data; with its offshoot. Of public bioinformatics databank distribution . Multiple Eukaryote Genome Summary. Generic Model Organism Database. Contact the lab at:. Jordan Hall, A416 and A506. Indiana University, Bloomington, IN 47405. Don Gilbert, Lab Director. Email: gilbertd@indiana.edu - gilbertd@bio.indiana.edu.

marmot.bio.indiana.edu

GIL: Genome Informatics Lab

http://marmot.bio.indiana.edu/gil/about

Conducts research on bioinformatics areas of gene and genome data management and distribution. Particular areas of investigation include. Of biology software and data; with its offshoot. Of public bioinformatics databank distribution . Multiple Eukaryote Genome Summary. Generic Model Organism Database. Contact the lab at:. Jordan Hall, A416 and A506. Indiana University, Bloomington, IN 47405. Don Gilbert, Lab Director. Email: gilbertd@indiana.edu - gilbertd@bio.indiana.edu.

marmot.bio.indiana.edu

Genome Informatics Lab: Research

http://marmot.bio.indiana.edu/gil/work

Of biology software and data; with its offshoot. Of public bioinformatics databank distribution . Multiple Eukaryote Genome Summary. Generic Model Organism Database. Tools See also here. ARGOS, A Replicable Genome infOrmation System http:/ eugenes.org/argos. Http:/ flybase.net/argos, http:/ www.gmod.org/argos/,. A document/object search and retrieval system for Genome and Bioinformatic Databases. See also here. GDS, Genome Directory System. GMOD extras: Unified Gene Report.

server7.wfleabase.org

Daphnia pulex Genome Open Access

http://server7.wfleabase.org/genome-summaries

Daphnia pulex Genome Open Access. Open Access to Daphnia pulex Genome. The arthropod crustacean Daphnia pulex (better known as the water flea) is a unique emerging model organism, straddling the genome reach of vertebrate model organisms such as Mouse, insects such as Drosophila, and nematodes such as Caenorhabditis elegans. A great example of this genome-environment connection comes from Daphnia's well known hemoglobin response, called into play as they rapidly turn blood-red when oxygen is depleted in ...

monarchbase.umassmed.edu

MonarchBase - Resources

http://monarchbase.umassmed.edu/resource.html

Download bulk data for local analysis. Contact us. If additional data contents or formats are required. V3 scaffolds (latest version). V1 contigs and AGP file (used for NCBI submission). Contigs of [ D. erippus. OGS20 peptide sequence (latest version). OGS20 nucleotide sequence (latest version). OGS20 annotation file (latest version) GFF. RNAseq alignment BED file. Accesses to Related Database:.

iubio.bio.indiana.edu

GIL: Genome Informatics Lab

http://iubio.bio.indiana.edu/argos/gil

Conducts research on bioinformatics areas of gene and genome data management and distribution. Particular areas of investigation include. Of biology software and data; with its offshoot. Including Biogrid and genome data-grid. Of public bioinformatics databank distribution . Public biology news and discussion groups. Multiple Eukaryote Genome Summary. Generic Model Organism Database. Contact the lab at:. Jordan Hall, room 336. Indiana University, Bloomington, IN 47405. Don Gilbert, Lab Director.

aphidbase.org

AphidBase: an aphid genomics database - Links

http://www.aphidbase.org/Links

By browsing our site you accept the installation and use cookies on your computer. Know more. AphidBase: an aphid genomics database. Subscribe to the website news in order to get latest information notifications. Subscribe to news of this website to know the latest informations. Please, leave your email adress below. Pea aphid genome at the Baylor College of Medecine. Pea aphid genome at the NCBI. FlyBase: a database for drosophila genetics and molecular biology. Beetle Base: Tribolium genome Database.

aphidbase.com

AphidBase: an aphid genomics database - Links

http://www.aphidbase.com/Links

By browsing our site you accept the installation and use cookies on your computer. Know more. AphidBase: an aphid genomics database. Subscribe to the website news in order to get latest information notifications. Subscribe to news of this website to know the latest informations. Please, leave your email adress below. Pea aphid genome at the Baylor College of Medecine. Pea aphid genome at the NCBI. FlyBase: a database for drosophila genetics and molecular biology. Beetle Base: Tribolium genome Database.

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Daphnia Genomics

Of Daphnia pulex and other species, including bulk data files, and all gene pages. Tools including microsatellites, cDNA, Cosmid and BAC libraries, GSS and ESTs, microarrays. Genome database development notes, tools and programs. Of Daphnia genome, and genome annotation tools. About this genome web. Daphnia [AT] iubio.bio.indiana.edu. Daphnia genomes at the crossroads. 2015 March: Daphnia magna. 2010 April: Daphnia pulex. 2007 July: Daphnia pulex. Public release 1 and genome summaries. DGC) whose members...

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