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WholeCell.orgM. genitalium Whole-Cell Model & Knowledge Base
http://www.wholecell.org/
M. genitalium Whole-Cell Model & Knowledge Base
http://www.wholecell.org/
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WholeCell.org | wholecell.org Reviews
https://wholecell.org
M. genitalium Whole-Cell Model & Knowledge Base
wholecell.org
WholeCell.org
http://www.wholecell.org/index.php?title=Frequently_asked_questions
Covert Lab, Stanford. Karr Lab, Mt Sinai. Covert Lab, Stanford. Karr Lab, Mt Sinai. Welcome to WholeCell.org! What is whole-cell modeling? The goal of whole-cell modeling is predict how genotype determines phenotype. Whole-cell models account for the specific function of every gene product and predict the dynamics of every molecule over the entire life cycle. Whole-cell models have the potential to enable engineers to rationally design cells to perform useful functions such as synthesizing drugs,...Sangh...
Frequently asked questions - Whole-cell Wiki
http://www.wholecell.org/wiki/index.php?title=Frequently_asked_questions
How can I run the model? How can I run a single sub-model? What language is the model implemented in? Why is the model implemented in MATLAB? Is MATLAB absolutely required? Can I use an older version of MATLAB? Do I really need MATLAB = 2009b? What platform is required to run the software? Is the knowledge base software required? What is the easiest way to use the knowledge base? What are the requirements to run the whole-cell virtual machine? How complete is the model? How were reaction kinetics curated?
WholeCellForum • Index page
http://www.wholecell.org/forum
Forum for whole-cell modeling. It is currently Sun Sep 18, 2016 4:35 am. Bull; View active topics. Forum for getting started whole-cell modeling. Sun Sep 18, 2016 1:27 am. 2016 Whole-Cell Modeling Summer School. Forum for 2016 Whole-Cell Modeling Summer School. Sat Sep 17, 2016 4:58 am. 2015 whole-cell modeling standards workshop. Forum for 2015 whole-cell modeling standards workshop. Fri Sep 16, 2016 3:30 pm. Log me on automatically each visit. In total there are 3. Most users ever online was 46.
WholeCell.org | About
http://www.wholecell.org/about.html
Covert Lab, Stanford. Karr Lab, Mt Sinai. Covert Lab, Stanford. Karr Lab, Mt Sinai. WholeCell.org is maintained by Jonathan Karr. Derek Macklin, and Markus Covert. Last updated Mar 9, 2015. Contact wholecell@lists.stanford.edu.
Whole-cell Wiki
http://www.wholecell.org/wiki
Welcome to the whole-cell wiki. This is a community resource for whole-cell modeling. Please register. To contribute to the wiki. What is whole-cell modeling? Getting started with whole-cell modeling. What is whole-cell modeling? The goal of whole-cell modeling is predict how genotype determines phenotype. Whole-cell models account for the specific function of every gene product and predict the dynamics of every molecule over the entire life cycle. Whole-cell models have the potential to enable e...30, 8...
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Karr Lab :: Publications
http://www.karrlab.org/publications
Karr Systems Biology Lab. Karr Systems Biology Lab. Cokelaer T, Bansal M, Bare C, Bila E, Bot BM, Neto EC, Eduati F, Gönen M, Hill SM, Hoff B, Karr JR. Küffner R, Menden MP, Meyer P, Nore R, Pratap A, Prill RJ, Weirauch MT, Costello JC, Stolovitzky G and Saez-Rodriguez J. DREAMTools: a Python package for scoring collaborative challenges. F1000Res. 4, 1030 (2015). Langner KM and Plewczynski D. Combined systems and structural modeling repositions antibiotics for Mycoplasma genitalium. Sanghvi JC, Macklin D...
Karr Lab :: Resources
http://www.karrlab.org/resources
Karr Systems Biology Lab. Karr Systems Biology Lab. Please use the links below to use the free, hosted versions of our software and download source code. In addition to the software packages listed here, we have also developed several utility libraries. These can be obtained from our MATLABCentral page. The first "whole-cell" model of the bacterium M. genitalium. Web-based software for creating model organism databases for whole-cell models. Implemented in Python using the Django framework. Graphical use...
WholeCellViz :: Mycoplasma genitalium
http://www.wholecellviz.org/viz.php
WholeCellViz is a web-based software program for visually analyzing whole-cell simulations of the Gram-positive bacterium Mycoplasma genitalium. WholeCellViz enables users to analyze several aspects of cell physiology including. The cell mass, volume, and shape,. The copy number of every metabolite, RNA, and protein,. The flux of every metabolic reaction,. The status of every molecular machine – DNA polymerase, RNA polymerase, ribosome, FtsZ ring, and. 389-401 (2012). Cell. Graduate Student in Biophysics.
÷ 0: Henitalium под кибернетическим микроскопом
http://comdivbyzero.blogspot.com/2015/07/henitalium.html
Henitalium под кибернетическим микроскопом. Рыская по бесконечным просторам сверхсети, наткнулся на весьма любопытную бактерию Mycoplasma Henitalium, простите мне мой латинский. Казалось бы, чем может заинтересовать аскетичного исследователя бактерия со столь говорящим названием? А между тем свойства этого организма приводят к совершенно закономерному интересу, научному, разумеется. Патогенные свойства бактерии, заставляющие известные места воспалённо сочиться, обеспечивают им первоначальное пристальное ...
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August 1st, 2014. You know how I said I could make more tips and pointers videos? Well, I just made another one. Booyah! I enjoyed making it, and I enjoyed watching it. Just saying. Clicking this photo will take you to the video. It's been a chore figuring out how to keep exercise as part of my daily routine, when Baxter will NOT let me work out. He seriously is an attention whore with SO MUCH ENERGY! He laid down on his bed and watched me with only partial interest! Subscribe to: Posts (Atom).
WholeCell.org
Covert Lab, Stanford. Karr Lab, Mt Sinai. Covert Lab, Stanford. Karr Lab, Mt Sinai. Welcome to WholeCell.org! What is whole-cell modeling? The goal of whole-cell modeling is predict how genotype determines phenotype. Whole-cell models account for the specific function of every gene product and predict the dynamics of every molecule over the entire life cycle. Whole-cell models have the potential to enable engineers to rationally design cells to perform useful functions such as synthesizing drugs,...Sangh...
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WholeCellKB
Welcome to the Mycoplasma genitalium. Is a gram-positive bacterium and human pathogen. Among all freely-culturable organism, M. genitalium. Has the smallest genome, containing slightly more than 580 kb. Primarily due to its reduced genome size, M. genitalium. Has been the subject of intense research over the past thirty years. M. genitalium. Was the second organism to be completely sequenced, and the first organism to have its genome completely synthesized de novo. Transcr. reg. activity. Sources, by type.
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