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Plant Expression Database

PLEXdb (Plant Expression Database) is a unified public resource for large-scale plant gene expression. PLEXdb serves as a bridge to integrate new and rapidly expanding gene expression profile data sets with traditional structural genomics and phenotypic data. Integrated portals to genetic and physical map positions, spliced alignments in PlantGDB, as well as protein pages in Gramene, GrainGenes, Legume Information System (LIS), SoyBase, MetNetDB, TIGR, and TAIR facilitates the use of whole-genome reference

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Plant Expression Database | plexdb.org Reviews
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PLEXdb (Plant Expression Database) is a unified public resource for large-scale plant gene expression. PLEXdb serves as a bridge to integrate new and rapidly expanding gene expression profile data sets with traditional structural genomics and phenotypic data. Integrated portals to genetic and physical map positions, spliced alignments in PlantGDB, as well as protein pages in Gramene, GrainGenes, Legume Information System (LIS), SoyBase, MetNetDB, TIGR, and TAIR facilitates the use of whole-genome reference
<META>
KEYWORDS
1 Barleybase
2 Plexdb
3 Microarray
4 www.barleybase.org
5 www.plexdb.org
6 Iowa State University
7 Barley
8 Arabidopsis
9 Citrus
10 Fusarium
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experiment,probe set,geo series,website,find your gene,middot; publications,middot; tools,middot; feedback,login id,plants,arabidopsis,barley,brachypodium,citrus,cotton,grape,maize,medicago,poplar,rice,soybean,sugarcane,tomato,wheat,search experiments
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Plant Expression Database | plexdb.org Reviews

https://plexdb.org

PLEXdb (Plant Expression Database) is a unified public resource for large-scale plant gene expression. PLEXdb serves as a bridge to integrate new and rapidly expanding gene expression profile data sets with traditional structural genomics and phenotypic data. Integrated portals to genetic and physical map positions, spliced alignments in PlantGDB, as well as protein pages in Gramene, GrainGenes, Legume Information System (LIS), SoyBase, MetNetDB, TIGR, and TAIR facilitates the use of whole-genome reference

INTERNAL PAGES

plexdb.org plexdb.org
1

PLEXdb Feedback

http://www.plexdb.org/modules/PD_general/feedback.php

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. We welcome suggestions and comments. Your input will help us build a better web site and a better gene expression database. Or enter your own subject:. This lets us know what you were looking at when you decided to send a comment). Please type the text you see in the image above. View All feedback: Feedback Archive.

2

PLEXdb - Gene Expression Atlas Experiments

http://www.plexdb.org/modules/PD_general/atlas.php

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. Gene Expression Atlases at PLEXdb. Explore gene expression in diverse organs, tissues, or developmental stages. Transcription patterns during barley development. Transcriptome analysis of Bowman vs 4 tillering mutants at 4 developmental stages. Comparative transcriptional profiling of organs of the barley spike. Brachy leaf, root, and stem.

3

PLEXdb Links

http://www.plexdb.org/modules/PD_general/links.php

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. I Microarray Related Links. Is a high-density oligonucleotide GeneChip manufacturer. The Barley1 GeneChip is the first Affymetrix high-density GeneChip for cereals. Affymetrix produces GeneChips for a wide range of organisms, including barley, Arabidopsis, C. elegans. Yeast, human, rat, Drosophila, and E. coli. BarleyBase extensively uses R...

4

Model Genome Interrogator

http://www.plexdb.org/modules/MGI

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. Lu, H, N. Lauter, E. Cannon, S. Dash, D. Hessel, M. Moscou, R. Wise, J. Dickerson, V. Brendel.

5

Plant Expression Database

http://www.plexdb.org/plex.php??database=Barley

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. MIAME/Plant Compliant Gene Expression Resources for Plants and Plant Pathogens. Photo of the day. More than 2,700 registered users from 77 countries have downloaded complete data sets more than 56,000 times. PLEXdb site experienced an average daily visit rate of 1900 in the last 12 months. Page last updated: September 23 2011 22:22:18.

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vitaceae.org vitaceae.org

Bioinformatics - IGGP

http://www.vitaceae.org/index.php/Bioinformatics

White paper towards a distributed information system on grapevine. The IGGP has developped a strategy to improve the access of the grapevine community to data. This was done in several steps ( File:PAG2016 GrapeIS 100116.pdf. Step 0: lots of discussions and brainstorming in the frame of a GRCN network (coord G. Cramer). Step 1 (2015): organization of a small workshop in Bordeaux with the sponsorship of ISVV, INRA and Gallo SA. Supports the following gene expression platforms:.

oatnews.com oatnews.com

Genomics | GrainGenes

http://www.oatnews.com/GG3/genomics

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Genome-specific transcriptome sequence datasets to BLAST against. Wheat D Genome Markers. Genetic map, sequences, and annotation of markers used to anchor the physical map below. WheatDB: Physical Mapping of the Wheat D Genome. BAC fingerprint contigs and anchoring markers from Aegilops tauschii. Physical Mapping of the Barley Genome. UK Cropnet. ACEDB d...

wheat.pw.usda.gov wheat.pw.usda.gov

Genomics | GrainGenes

http://wheat.pw.usda.gov/GG3/genomics

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Genome-specific transcriptome sequence datasets to BLAST against. Wheat D Genome Markers. Genetic map, sequences, and annotation of markers used to anchor the physical map below. WheatDB: Physical Mapping of the Wheat D Genome. BAC fingerprint contigs and anchoring markers from Aegilops tauschii. Physical Mapping of the Barley Genome. UK Cropnet. ACEDB d...

maizegametophyte.org maizegametophyte.org

Maize Gametophyte Project

http://www.maizegametophyte.org/index.html

Maize) to accomplish a genomic-scale investigation of gametophytically-required genes." /. Functional Genomics of Maize Gametophytes. After Meiosis, Plant Spores Develop into Multicellular Gametophytes Dependent on Their own Haploid Genomes as well as the Parent Diploid Plant. Central cell, a. Polar nuclei, s. Generative cell, end. Vegetative nucleus, va. Sperm cells, pt. Pollen tube. FG1-FG7. Female gametophyte stage 1 to 7. FM. Free microspore, VM. Vacuolated microspore, BC. Bicellular pollen, MP.

hordeumtoolbox.org hordeumtoolbox.org

The Hordeum Toolbox

http://www.hordeumtoolbox.org/about.php

Select Lines by Properties. Select Lines by Phenotype. Cluster Lines by Genotype. Download Genotype/Phenotype Data (Tassel format). Download Genotype Data (Flapjack format). Will be made public within six months of release by the. Curators. During the six month period, the data will only be available to members of the Barley. Team unless explicitly released by the data creators. The THT software is available under the GNU General Public License ( LICENSE. And may be downloaded from github. To send questi...

rye.pw.usda.gov rye.pw.usda.gov

Genomics | GrainGenes

http://rye.pw.usda.gov/GG3/genomics

Skip to main content. A Database for Triticeae and Avena. GSP: Genome Specific Primers. Links to Related Sites. US Wheat and Barley Scab Initiative. Genome-specific transcriptome sequence datasets to BLAST against. Wheat D Genome Markers. Genetic map, sequences, and annotation of markers used to anchor the physical map below. WheatDB: Physical Mapping of the Wheat D Genome. BAC fingerprint contigs and anchoring markers from Aegilops tauschii. Physical Mapping of the Barley Genome. UK Cropnet. ACEDB d...

rasmusfrandsen.dk rasmusfrandsen.dk

Links

http://www.rasmusfrandsen.dk/links.htm

Where to go for more information? This database contains the latest gene calls for F. graminearum. And is being updated continuously. MIT) F. graminearum. Genomes with latest annotations, supported by GeneChip data (Affymetix data). All fully sequenced filamentous fungi (both annotated and unannotated). Softberry: http:/ linux1.softberry.com/berry.phtml. FGENESH HMM based gene structure prediction. FGENESH HMM plus similar protein-based gene prediction. Augustus: http:/ augustus.gobics.de/.

rasmusfrandsen.dk rasmusfrandsen.dk

Fusarium

http://www.rasmusfrandsen.dk/interest.htm

Organisms I work with. With filamentous fungi and specifically Fusarium. The first time I met Fusarium. During my time as a theme student with Associated Professor Morten Grell and Professor Henriette Giese. I was immediately fascinated by this strange organism and it. I conducted in collaboration with Jens A. Andersson (now Ph.D.), centered on the ability of different fungicides to induce autophagy. Late stages of the. Access to the Fusarium graminearum. PH-1 genome sequence prior to its. The few mutant...

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Plant Expression Database

Middot; Gene List Suite. Middot; Expression Atlases. Middot; About PLEXdb. PLEXdb is committed to making expression data publicly available to researchers world-wide. MIAME/Plant Compliant Gene Expression Resources for Plants and Plant Pathogens. PLEXdb is now a static site after funding stopped from NSF. We have stopped registration of new users. But past users who have data can login when needed and interact with the site. You can download data using the authentication provided at the download page.

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