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ISB Seattle Proteome Center

Institute for Systems Biology. ISB Seattle Proteome Center. The goal of the Seattle Proteome Center (SPC) is to evolve as a local, highly interactive, multi-disciplinary group, bringing together scientific expertise from diverse areas such as biology, chemistry, proteomics, physics, bioinformatics, and statistics, to enhance and develop innovative proteomic technologies and apply them to biological questions relevant to systems biology and, ultimately, human health and wellbeing.

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CONTACTS AT PROTEOMECENTER.ORG

Institute for Systems Biology

Andrew Peabody

401 T●●●●●Ave N

Se●●le , Washington, 98109

US

1.20●●●●1342
ap●●●●●●@systemsbiology.org

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Institute for Systems Biology

Erik Schweighofer

401 Te●●●●●● North

Se●●le , Washington, 98109

US

1.20●●●●1285
es●●●●●●@systemsbiology.org

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Institute for Systems Biology

Russ Ingram

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Se●●le , Washington, 98109

US

1.20●●●●2140
ri●●●●●@systemsbiology.org

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ISB Seattle Proteome Center | proteomecenter.org Reviews
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Institute for Systems Biology. ISB Seattle Proteome Center. The goal of the Seattle Proteome Center (SPC) is to evolve as a local, highly interactive, multi-disciplinary group, bringing together scientific expertise from diverse areas such as biology, chemistry, proteomics, physics, bioinformatics, and statistics, to enhance and develop innovative proteomic technologies and apply them to biological questions relevant to systems biology and, ultimately, human health and wellbeing.
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1 new at spc
2 about the center
3 overview
4 center structure
5 people
6 industry relationships
7 administrative core
8 center research
9 technology modules
10 pilot projects
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new at spc,about the center,overview,center structure,people,industry relationships,administrative core,center research,technology modules,pilot projects,htpf wg,macrophage wg,faims,resources,protocols,software,proteomic standards,training,software course
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ISB Seattle Proteome Center | proteomecenter.org Reviews

https://proteomecenter.org

Institute for Systems Biology. ISB Seattle Proteome Center. The goal of the Seattle Proteome Center (SPC) is to evolve as a local, highly interactive, multi-disciplinary group, bringing together scientific expertise from diverse areas such as biology, chemistry, proteomics, physics, bioinformatics, and statistics, to enhance and develop innovative proteomic technologies and apply them to biological questions relevant to systems biology and, ultimately, human health and wellbeing.

SUBDOMAINS

tools.proteomecenter.org tools.proteomecenter.org

SPC Proteomics Tools

Seattle Proteome Center (SPC) - Proteomics Tools. NHLBI Proteomics Center at the Institute for Systems Biology. The Trans-Proteomic Pipeline (TPP). Includes all of the steps of the ISB MS/MS analysis pipeline, after the database search. Most users will only need to download the TPP distrubtion. Download the TPP Installer for Windows. The individual tools that make up the TPP, as well as a few which are not included in the TPP distrubution, are categorized below. Please see the SPC Tools Wiki. Statistical...

INTERNAL PAGES

proteomecenter.org proteomecenter.org
1

Seattle Proteome Center (SPC)

http://www.proteomecenter.org/admin_core.php

Institute for Systems Biology. Dr Aebersold's research and teaching have been recognized by the Killam Research Prize, the Pehr Edman Award, the Widmer Award, the Biemann Medal, and the World Technology Network Award for Biotechnology. Dr. Aebersold is a consulting editor for the journal Physiological Genomics. Has been a member of the Editorial Advisory Boards of Protein Science. 1992-98), Functional Proteomics. 1999-present), Analytical Biochemistry. 1991-2001), Functional and Integrative Genomics.

2

Seattle Proteome Center (SPC)

http://www.proteomecenter.org/bwg.php

Institute for Systems Biology. Three biology working groups (BWG) will address key questions of contemporary heart, blood and lung research and provide the interface between the technology development and applied activities of the Center. The groups bring together distinguished researchers from the Puget Sound area with the purpose of identifying novel approaches to address biological problems utilizing proteomics. The three working groups will focus on:. Cardiovascular and blood cell development.

3

Seattle Proteome Center (SPC)

http://www.proteomecenter.org/course.php

Institute for Systems Biology. 2016 Proteomics Course - Seattle. The Course also includes instruction on using SPC resources such as PeptideAtlas. And related tools for design of targeted proteomics workflows via selected reaction monitoring (SRM/MRM). The next course is planned for:. September 16 - 17, 2016, in Taipei, Taiwan. Information on past Proteomics Informatics Courses may be found on their respective pages below:. February 1 - 5, 2016, at ISB in Seattle, WA.

4

Seattle Proteome Center (SPC)

http://www.proteomecenter.org/pilot_projects.php

Institute for Systems Biology. Pilots are exploratory projects of limited duration. The objective of pilots is to rapidly establish proof-of-principle for an idea, technique or concept and thus serve as catalysts of new proteome research directions pursued by the Center. At any given time, the Center will maintain 2-4 pilot projects. If successful, pilots may be developed into full proteome research projects. New pilot projects will be selected by the Executive Committee.

5

Seattle Proteome Center (SPC)

http://www.proteomecenter.org/nav.course_2015-11.php

Institute for Systems Biology. 2016 Proteomics Course - Seattle. Proteomics Informatics Course LNBio in Campinas, Brazil: November 6-10, 2015. Download a PDF Flyer for the Course. Prerequisite for participation in the course is a demonstrated understanding in the operation of tandem mass spectrometers, the basic structure and interpretation of peptide MS/MS spectra and proficiency in the use of computers. A commitment to attend the entire course is also required. Laboratório Nacional de Biociências.

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peptideatlas.org peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/feedback.php

Farrah, et al.). Thank you for taking the time to send us feedback to help us improve this resource. Please provide the information below in as much detail as you can:. Email address (so we can respond to you about your feedback. No, we won't send you spam):. Verification Code (Please type in the word 'ISB'. This helps us deflect spammers who try to use this form):.

peptideatlas.org peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/repository/repository_public_Hs_Plasma2.php

RAW DATA AVAILABLE FOR DOWNLOAD. You can use the row above the orange row to filter and limit the data displayed within the table. Just type or select the search terms in the box above each column, and hit enter, the table will be filtered according to all filter terms you entered. Click "reset" on the up right corner of the table to clear all the texts in the first row. There are 91 experimental datasets available for download (Wed Apr 13 10:03:47 PDT 2011 ). 2007-08-08 SEC IEF LTQFT. HUPO PPP-I Lab 1 b...

peptideatlas.org peptideatlas.org

PeptideAtlas Builds Download

http://www.peptideatlas.org/builds/human/brain/index.php

Farrah, et al.). Below are individual Human PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A link named "PSM FDR" denotes the PSM FDR value used in the build. CURRENT BUILD: Human brain 201106. Peptide sequences in FASTA format:. PSM FDR = 0.0035. Biosequence Set in FASTA format:. PSM FDR = 0.0035. PSM FDR = 0.0035. Database tables exported as an XML file:. PSM FDR = 0.0035. PSM FDR = 0.0035. PSM FDR = 0.0035.

peptideatlas.org peptideatlas.org

PeptideAtlas - Funding

http://www.peptideatlas.org/funding.php

Farrah, et al.). Funding sources for PeptideAtlas. The PeptideAtlas project acknowledges the various funding sources that have made it possible to develop and maintain this community resource. National Human Genome Research Institute. National Institute of General Medical Sciences. This project has been funded in part with Federal funds from the National Heart, Lung, and Blood Institute, National Institutes of Health, under. Contract No. N01-HV-28179.

peptideatlas.org peptideatlas.org

Sc PeptideAtlas Builds Download

http://www.peptideatlas.org/builds/honeybee/index.php

Farrah, et al.). Below are individual Honeybee PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. CURRENT BUILD: Honeybee 201003. Peptide sequences in FASTA format:. PSM FDR = 0.0007. Biosequence Set in FASTA format:. PSM FDR = 0.0007. PSM FDR = 0.0007. Database tables exported as an XML file:. PSM FDR = 0.0007. Database tables exported as mysql dump file:. PSM FDR = 0.0007. Peptide CDS and chromosomal coordinates:.

peptideatlas.org peptideatlas.org

PASSEL

http://www.peptideatlas.org/passel

Farrah, et al.). The PeptideAtlas SRM Experiment Library (PASSEL) is a component of the PeptideAtlas project that is designed to enable submission, dissemination, and reuse of SRM experimental results from analysis of biological samples. Browse available SRM experiments. Submit an SRM dataset. Access pre-publication data with reviewer password. In Liverpool, UK. SRM is Nature method of the year 2012. PASSEL receives datasets from the Human Proteome Project special issue in JPR.

humanproteomics.wisc.edu humanproteomics.wisc.edu

Human Proteomics Program, UW-Madison, Additional Links

https://humanproteomics.wisc.edu/links.html

School of Medicine and Public Health. School of Medicine and Public Health. Other Proteomics facility around the world. Mayo Clinic College of Medicine. Boston University School of Medicine (BUSM). Yale University Proteomics Center. Harvard University Proteomics Center. Stanford University Proteomics Center. Medical College of Wisconsin Proteomics Center. Institute for Systems Biology (Seattle Proteome Center). John Hopkins University School of Medicine. Medical University of South Carolina (MUSC).

peptideatlas.org peptideatlas.org

Peptide Atlas

http://www.peptideatlas.org/overview.php

Farrah, et al.). The long term goal of the PeptideAtlas project is full annotation of eukaryotic genomes through a thorough validation of expressed proteins. The PeptideAtlas provides a method and a framework to accommodate proteome information coming from high-throughput proteomics technologies. The online database. Administers experimental data in the public domain. We encourage you to contribute to the database. Details of the PeptideAtlas construction can be found within the first publication. The pe...

biotecnologie.unipg.it biotecnologie.unipg.it

Enti e Imprese

http://biotecnologie.unipg.it/index.php/enti-e-imprese

Consorzio Interuniversitario per le Biotecnologie. Http:/ www.cibiotech.it. Http:/ www.cstl.nist.gov/biotech/. Osservatorio Biotec del Comitato per la Biosicurezza e le Biotecnologie. Http:/ www.osservatoriobiotec.it. Scuola Internazionale Superiore di Studi Avanzati. Http:/ www.sissa.it. Sito di Proteomica dell'Institute for Systems Biology. Http:/ www.proteomecenter.org. Piano di occupazione delle aule. I più visitati . CdL Triennale in Biotecnologie. Immatricolazioni A.A. 2014/2015.

finneeblog.wordpress.com finneeblog.wordpress.com

guillaume.erny | finnee blog

https://finneeblog.wordpress.com/author/guillaumeerny2014

The start of a new academical Year! A new academical year is always a good start to access your past work and plan the following tasks. In term of Finnee, one of the great things about being a self-taught programmer is that you always learn new things. The main problem is that you also often realised that you would have done thinks differently. Finnee should be compatible with Matlab 2011 to 2016 while Finnee2016. Have a great new academical year. September 19, 2016. June 6, 2016. A working version of Ma...

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Welcome

Welcome to EU Binder Projects. A European infrastructure of ligand binding molecules against the human proteome. Started European binder projects as a Coordination Action funded under the EC 6th Framework Programme. ProteomeBinders documents the current state of the art in binder-based proteomics and developed the follow-on EC FP7 projects AffinityProteome and AFFINOMICS. Advanced affinity tools and technologies for high throughput studies of the human proteome. L INKS and EVENTS.

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proteomecenter.org proteomecenter.org

ISB Seattle Proteome Center

Institute for Systems Biology. ISB Seattle Proteome Center. The goal of the Seattle Proteome Center (SPC) is to evolve as a local, highly interactive, multi-disciplinary group, bringing together scientific expertise from diverse areas such as biology, chemistry, proteomics, physics, bioinformatics, and statistics, to enhance and develop innovative proteomic technologies and apply them to biological questions relevant to systems biology and, ultimately, human health and wellbeing.

proteomecentral.com proteomecentral.com

GPMDB Proteome Database

The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. Search by protein description keywords. Returns results with either. Mark with a plus : statin. Enter ...

proteomecentral.org proteomecentral.org

GPMDB Proteome Database

The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. Search by protein description keywords. Returns results with either. Mark with a plus : statin. Enter ...

proteomecentral.proteomexchange.org proteomecentral.proteomexchange.org

ProteomeXchange Datasets

Below is a listing of publicly accessible ProteomeXchange datasets. Additional datasets will become visible as they are released. Go to Advanced Search]. Go back to Basic free-text Search]. Build your metadata query constraints below. Note that it is not yet possible to query for individual proteins:. Search metadata for ProteomeXchange datasets: (e.g. "liver", "musculus", "5600", etc.). Note: it is not yet possible to query for individual proteins contained in these datasets at ProteomeCentral. Shotgun ...

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